PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146124.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 267aa    MW: 29847.7 Da    PI: 6.2785
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.6e-15993195
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk l     + sg +++p  f++++ +g k+++kt +l++  s ++Wev    ++++    lt+GWk+F  a++L+ gD+v+Fk++g++ f  +v+
  XP_009146124.1  9 FFKPL--LPGFHSG-VTIPLGFFSQYiEG-KTNQKTWKLRSdASDQTWEVIQ--EGRR----LTGGWKDFTTAHDLRIGDIVIFKHEGDMVF--HVT 93
                    55666..5556665.9**********654.467789***997889*****99..8887....***********************9999988..766 PP
2B368.87.5e-22153246498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++++lk + l+lp   ++   ++k++ ++ +l +++g+sW+v l+++ ++g+y++t+GW++F+ +n+ ++gD++vF ++g+ ++++++ v+ 
  XP_009146124.1 153 AEVTASNLKADKLSLPVAATTCTALNKQC-QETILVNKEGNSWTVSLRFSESGGMYYITRGWRKFCLDNRCEVGDIFVFNVVGDGKTTPLMCVCP 246
                     5678999999********98555888766.589999************************************************99999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-203100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-204104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561698IPR003340B3 DNA binding domain
CDDcd100175.42E-15795No hitNo description
SMARTSM010191.2E-19998IPR003340B3 DNA binding domain
PfamPF023621.1E-91890IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18144239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-19149239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31150248IPR003340B3 DNA binding domain
CDDcd100176.57E-15150230No hitNo description
SMARTSM010195.4E-17151248IPR003340B3 DNA binding domain
PfamPF023625.5E-21153246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MANPHEPHFF KPLLPGFHSG VTIPLGFFSQ YIEGKTNQKT WKLRSDASDQ TWEVIQEGRR  60
LTGGWKDFTT AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTHPHII KEEADADDVA  120
DDGAVDADDN ENHHKISGSG AMSSSSFDYC FMAEVTASNL KADKLSLPVA ATTCTALNKQ  180
CQETILVNKE GNSWTVSLRF SESGGMYYIT RGWRKFCLDN RCEVGDIFVF NVVGDGKTTP  240
LMCVCPERKE CSELLSKHLS RKSGRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-136AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146124.20.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLM4E0J00.0M4E0J0_BRARP; Uncharacterized protein
STRINGBra022287.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-62B3 family protein