PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146116.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 368aa    MW: 42119.3 Da    PI: 9.2871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-222571551
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++
  XP_009146116.1 25 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSDGELKTWPK 71
                    578899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-61372IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-1726104IPR002100Transcription factor, MADS-box
CDDcd002666.60E-172993No hitNo description
PROSITE profilePS5006611.8862973IPR002100Transcription factor, MADS-box
PfamPF003193.0E-133069IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSSSSLACLP SSSSSQIRQN HFQKTSSLKA TSLAKRQVTV FKKARELSIL CGIEVCVIYY  60
GSDGELKTWP KDREKVKDMA RRYSQLSDMK RRKGQDDLDK FLKKINKEDS KKKKKMKKVK  120
VESSCKYPDW DPRFDNCSVE QLTELIQSLE HSETKLQHRL RGAVESQRQR NMYYTTMTGQ  180
EQMNHLQQHS NQVSMDQYNH GPGTLPQLPV STSAFNQSQS LAPLPNSLTI HQNPNMESYS  240
RLLGVQETGM NELLSMNMLP YNNINTNNVN VFPNQFHQNS YNMEDYSGFL GVQETGINNM  300
SSEDYSGLLW TQGTGINGLQ NMDMFGYNNN SNNNAYGFSH HQPVQYPGQR APLGFQYMDR  360
STQNIRPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190116RRKGQDDLDKFLKKINKEDSKKKKKMK
2101117LKKINKEDSKKKKKMKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146116.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146116.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-110AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLM4E0P40.0M4E0P4_BRARP; Uncharacterized protein
STRINGBra022341.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.16e-99AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]