PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145952.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 390aa    MW: 44187 Da    PI: 8.8292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.7e-1124116399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     k l+p  + ks ++ ++p + ++++   ++ +  ++++ ++++sW++ l  ++ ++  +++++ W+eFv++n L + D++ F+++g++ f   v+
  XP_009145952.1  24 KSLSPGQNWKSkSMRIIPEEILRSNP--EAFEHRVVFTAPWNNSWQLWL--QGDKNClFMIKEDWNEFVDDNLLASDDTLRFTHQGTMYF--QVR 112
                     55555555555245589999999995..345568***************..44444459************************9998888..899 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_009145952.1 113 IFKK 116
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1414118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-1416117IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-1322117IPR003340B3 DNA binding domain
PROSITE profilePS5086310.34823117IPR003340B3 DNA binding domain
PfamPF023623.7E-834116IPR003340B3 DNA binding domain
CDDcd100172.26E-834115No hitNo description
SuperFamilySSF1019364.9E-9162249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-7163258IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0036169262IPR003340B3 DNA binding domain
PROSITE profilePS508637.443226262IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-9290375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-6290375IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-6295379No hitNo description
SMARTSM010191.8E-4297387IPR003340B3 DNA binding domain
PROSITE profilePS508636.71354390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MKRKKLPEGE EIHQTQSKKS SFSKSLSPGQ NWKSKSMRII PEEILRSNPE AFEHRVVFTA  60
PWNNSWQLWL QGDKNCLFMI KEDWNEFVDD NLLASDDTLR FTHQGTMYFQ VRIFKKDGKE  120
ILSAPLEVEP PHNSHQEPTT VSASGGGRQS FAHVGNPERY LLNPNNPYFE KTLTKTNTAL  180
YVSSPVVKKY ELEFGPRNSS MHFLLPDGNK LEGFNKIYSG LHAFLGWANV CQKYNLKQGD  240
TVVCEFELSG RVVIAVRVHF ATASNSASGR QTSRGRESFD HVESPERYLF NPNNPYFEKT  300
LTKTNSVLYV SPPVIKKYGL EFGPHSSSID FLLPDGSKME GFTKSYGGLY GFLGWAAVCQ  360
KYNLKPGDSV VCEFELSRGV VSAVRVHFVN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.117830.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145952.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D96e-91Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLM4E0G60.0M4E0G6_BRARP; Uncharacterized protein
STRINGBra022263.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.33e-89B3 family protein