PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145737.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 240aa    MW: 27381.1 Da    PI: 6.2437
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.4e-14993195
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffk l     ++sg + +p +f ++h  g +   +k  +l++  s + Wev    +++    +ltkGWkeF +a++L+ gD+v+Fk++g++ f  +v
  XP_009145737.1  9 FFKPL--LPGFQSG-VAIPLDFYSKHiqGAE--INKPWKLRSdASDQIWEVIR--EGR----TLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HV 92
                    56666..5666776.99*********86433..4445666654999****988..555....4***********************9999988..76 PP

                    E CS
              B3 95 k 95
                    +
  XP_009145737.1 93 T 93
                    6 PP
2B365.76.8e-21121214498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++ + k + + lp + + ++g  +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+   gD +vF ++g+ ++++++ v+ 
  XP_009145737.1 121 AEVTPTNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 214
                     5678999999*********9.7755556779*****************************************************9999*999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-193100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-194103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561698IPR003340B3 DNA binding domain
CDDcd100174.38E-14795No hitNo description
SMARTSM010197.3E-19998IPR003340B3 DNA binding domain
PfamPF023627.2E-91790IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-17117210IPR015300DNA-binding pseudobarrel domain
CDDcd100174.04E-14118206No hitNo description
PROSITE profilePS5086313.366118216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16118210IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-17119216IPR003340B3 DNA binding domain
PfamPF023628.6E-19121214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT  60
LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EILWSDADDA PTFSYDYCFL  120
AEVTPTNQKD DKMFLPVEAM RCGALNQQCK EVKLVNKEGK SWTARFGFSE SDGAYYISRG  180
WRKFCRDNRC TNGDLFVFNV VGDGTTTPLL CVCPERKECT ELLIKHFSRI DGSIASTSRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324950.0AC232495.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB051M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118452.10.0PREDICTED: B3 domain-containing protein REM9-like
RefseqXP_009145737.10.0PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM4ERY81e-180M4ERY8_BRARP; Uncharacterized protein
STRINGBra031565.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-57B3 family protein