PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145563.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 109aa    MW: 12612.4 Da    PI: 6.7916
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.4e-15993195
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffk l     ++sg + +p +f ++h  g +   +k  +l++  s + Wev    +++    +ltkGWkeF +a++L+ gD+v+Fk++g++ f  +v
  XP_009145563.1  9 FFKPL--LPGFQSG-VAIPLDFYSKHiqGAE--INKPWKLRSdASDQIWEVIR--EGR----TLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HV 92
                    66666..6667776.99*********86433..4445666654999****988..555....4***********************9999998..76 PP

                    E CS
              B3 95 k 95
                    +
  XP_009145563.1 93 T 93
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-203100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-204105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561698IPR003340B3 DNA binding domain
CDDcd100171.43E-14795No hitNo description
SMARTSM010197.3E-19998IPR003340B3 DNA binding domain
PfamPF023629.5E-101790IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT  60
LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTSSHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553381e-174AC155338.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence.
GenBankAP0116221e-174AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145563.11e-77PREDICTED: B3 domain-containing protein REM7-like
SwissprotO817781e-45REM9_ARATH; B3 domain-containing protein REM9
TrEMBLA0A397ZI436e-73A0A397ZI43_BRACM; Uncharacterized protein
STRINGBra036063.1-P3e-73(Brassica rapa)
STRINGBra036066.1-P3e-73(Brassica rapa)
STRINGBra037504.1-P2e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.16e-48B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Wang S, et al.
    Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006027
    [PMID:27138552]