PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145559.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 183aa MW: 20697.4 Da PI: 5.0089 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.8e-14 | 12 | 81 | 15 | 89 |
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + ++p f+++h++ k+++kt +l++ s + Wev ++++lt+GWk+F a++L+ gD+v+Fk++g+ XP_009145559.1 12 LQTIPLGFFSKHKEGKTNQKTWKLRSdASDQNWEVIQ------EGMTLTGGWKDFTTAHDLQIGDVVLFKHEGEIV 81 458*********77788999****997888*****99......6678***********************776433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.011 | 1 | 90 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.91E-11 | 6 | 87 | No hit | No description |
SMART | SM01019 | 5.6E-9 | 11 | 90 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-15 | 13 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-9 | 14 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-16 | 29 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.795 | 130 | 183 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-5 | 130 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MYFLFDYLCL FLQTIPLGFF SKHKEGKTNQ KTWKLRSDAS DQNWEVIQEG MTLTGGWKDF 60 TTAHDLQIGD VVLFKHEGEI VFHVTPFGPS CCEIQYTHPH IIKEEADAGD ADDNEIRGTW 120 AMSSFSFDYC FLAEVTASNL KADKLYLPKG ATSSTALNKQ CQEMILVNKE GNSWTVTLLL 180 THG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145559.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189464 | 1e-166 | AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145559.1 | 1e-136 | PREDICTED: B3 domain-containing protein REM7-like | ||||
TrEMBL | M4DXM4 | 1e-106 | M4DXM4_BRARP; Uncharacterized protein | ||||
STRING | Bra021270.1-P | 1e-107 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 4e-42 | B3 family protein |