PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145454.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 108aa    MW: 12208 Da    PI: 8.4964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-192821798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     lp + + ++g  +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+   gD +vF ++g+ ++++++ v+ 
  XP_009145454.1  2 FLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 82
                    6788887.6644456779*****************************************************9999**99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.0E-8184IPR003340B3 DNA binding domain
PROSITE profilePS5086314.142184IPR003340B3 DNA binding domain
CDDcd100173.38E-13174No hitNo description
PfamPF023621.5E-17182IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-15280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-14679IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MFLPVEAMRC GALNQQCKEV KLVNKEGKSW TARFGFSESD GAYYISRGWR KFCRDNRCTN  60
GDLFVFNVVG DGTTTPLLCV CPERKECTEL LIKHFSRIDG SIASTSRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553461e-166AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
GenBankAP0116221e-166AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129830.12e-76PREDICTED: B3 domain-containing protein REM2-like
RefseqXP_009145454.11e-76PREDICTED: B3 domain-containing protein REM2-like
TrEMBLM4DVR92e-74M4DVR9_BRARP; Uncharacterized protein
TrEMBLM4F4R35e-74M4F4R3_BRARP; Uncharacterized protein
TrEMBLM4F4R44e-75M4F4R4_BRARP; Uncharacterized protein
STRINGBra020613.1-P4e-75(Brassica rapa)
STRINGBra036066.1-P9e-75(Brassica rapa)
STRINGBra036068.1-P7e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.17e-14B3 family protein