PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009145434.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 273aa MW: 31153.6 Da PI: 6.9404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009145434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.8e-05	165	200	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ +++ L +++P+ kK+s ++Le++ +YI L XP_009145434.1 165 RKVSDRIRSLEKIMPWE-----KKMSLGATLEETHKYITFL 200 6899**********9.....8*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.683	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-5	166	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-4	166	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MESCYEFDSL SELPPLPQAY APMEEYYPYD IAPLESLPPF PHSDFAPHGG LITFSDAHQE 60 YLQLQKQQQH CAEPMFTDSS LSLVTRDYLT ESTRFENLFS HDVPFLYLPD LKSVEDARSP 120 PPCLSLAPPP LPVARQRHVR SRVNNTFSIS SKSKAPACQN VQGTRKVSDR IRSLEKIMPW 180 EKKMSLGATL EETHKYITFL HSQIASLRWM PLDSVYPTKP REETTSLLNS LTRQQLLQVL 240 ANSPGSRNVL YKQGVCVFSY EQLLSLKMMA RNL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009145434.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145434.1	0.0	PREDICTED: transcription factor bHLH117
Swissprot	Q9LRJ4	3e-71	BH117_ARATH; Transcription factor bHLH117
TrEMBL	M4ERA1	0.0	M4ERA1_BRARP; Uncharacterized protein
STRING	Bra031324.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]