PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 546aa MW: 61035.1 Da PI: 4.6279 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.5 | 3.9e-47 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yLk+k+ +k+l++ ++i vd+yk+eP dLp + +k+++++w++F++r++ky++ r+ r t++gyWkatgkd ++ XP_009145145.1 17 VPGFRFHPTDEELVMYYLKRKMYRKRLTV-NAIGVVDVYKIEPDDLPgEsVLKTGDRQWFYFTPRSRKYPNAARSGRGTATGYWKATGKDPVIVY 110 69*************************99.89**************96347788999********************************999999 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfy+grap+ge+tdWvmhey++ XP_009145145.1 111 -NSRSVGLKKTLVFYRGRAPTGERTDWVMHEYTM 143 .999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.267 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-53 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-24 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MANPCPNSCF KEGKFTVPGF RFHPTDEELV MYYLKRKMYR KRLTVNAIGV VDVYKIEPDD 60 LPGESVLKTG DRQWFYFTPR SRKYPNAARS GRGTATGYWK ATGKDPVIVY NSRSVGLKKT 120 LVFYRGRAPT GERTDWVMHE YTMNEEELHP CKNAKDYYAL YKLFKKSGSG PKNGEDYGAP 180 FQEKEWVDDD SDSDSEDGDD IALPEEPLAL VRHEDTRFVD NARLFEPVNV QLDDFEEIPQ 240 ICINGLASSV PQVNREEEIQ STLVNNSSGE FLKPQQTGRF LPNGEPYIRP SSSGVEPFVF 300 EKEDYIEMDD LLASELAVER PAQFLNPGEF GDFNEFDQLF HDVSMSLDME PIAPGASVHP 360 SSPSKFADNK SNEKQQFQDQ IPENKVNNNN LDDFTDNMWF QDDDDQAVLF DQPQSITSGA 420 FAPLPSSGVM PGSTNLTVSA QDQEGENGGG TSPFTSALWA FIDSIPSTPA SACVGPINRT 480 FVRMSSFSRI RYSKKVNGTP PVTSTVVAKK RSRNRGFLVL SIVGALCAIF WVFIATVQAS 540 GRPVLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-42 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 509 | 514 | KRSRNR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145145.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145145.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | M4F043 | 0.0 | M4F043_BRARP; Uncharacterized protein | ||||
STRING | Bra034436.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |