PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144808.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HRT-like
Protein Properties Length: 431aa    MW: 48402 Da    PI: 10.2082
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.93.1e-17237267131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv+ edG++C + Pv gRKRC eHKG+Ri
  XP_009144808.1 237 VCGVLQEDGTTCLTAPVTGRKRCTEHKGQRI 267
                     7*****************************7 PP
2HRT-like44.92e-14285315131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGvil     C+ +Pv gRKRCe HKGmR+
  XP_009144808.1 285 ICGVILPEMVRCRSKPVSGRKRCEDHKGMRV 315
                     8*****************************7 PP
3HRT-like27.45.9e-09356382228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     C +++++G +C+r++ kg  RC++HK+
  XP_009144808.1 356 CEATTKNGLPCTRSAPKGTRRCWQHKD 382
                     99************************7 PP
4HRT-like597.4e-19399429131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv+l  GsvC+++PvkgRKRC+eHKGmRi
  XP_009144808.1 399 VCGVKLYTGSVCEKPPVKGRKRCQEHKGMRI 429
                     7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
NNSFVFKKTK KKTKKKTLSS TILQWPREFQ NLKKQKKKTC VKFSIPIRSV TXVVVTMYKR  60
DDYVRNKPDG VFSRWQGFAR SMLLPKPFSE TAELRRTVAD YSLISRGLAP KILTGAKGNR  120
EDLRVGKDFV GSRYRVQESI QGLGVAVNIH DADDISHGQT ESIRTRLRSY GRPVPLLKKL  180
GDNASQTITQ KKIGSRSKDK KHGFEEGRDV SCVEPEENNN TNSVHDDIVD GSDSASVCGV  240
LQEDGTTCLT APVTGRKRCT EHKGQRITCA PPVKKPPCEE ETEEICGVIL PEMVRCRSKP  300
VSGRKRCEDH KGMRVNAFFF LLNPTDRDKI LKEDKSKPET RTSSMNQEEP GESHSCEATT  360
KNGLPCTRSA PKGTRRCWQH KDEALDHKSS ENVKSTTVVC GVKLYTGSVC EKPPVKGRKR  420
CQEHKGMRIT S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614KKTKKKTKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5335060.0AY533506.1 Brassica napus effector of transcription mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144808.20.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION
RefseqXP_013625967.10.0PREDICTED: uncharacterized protein LOC106332051
SwissprotA2RQG70.0ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBLM4ECE90.0M4ECE9_BRARP; Uncharacterized protein
STRINGBra026458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-110