PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144622.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 290aa    MW: 33426 Da    PI: 9.5714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+
  XP_009144622.1 10 FIANDSSRKATYKKRKKGLMKKVNELSTLCGINACAIIYSP 50
                    899*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.708149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-24160IPR002100Transcription factor, MADS-box
CDDcd002669.15E-24285No hitNo description
SuperFamilySSF554551.44E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSSRKAT YKKRKKGLMK KVNELSTLCG INACAIIYSP YDSNPEVWPS  60
NSGVQRIISE FRTLPEMDQN KKMVDQETFL RQRIAKASDN LKKQRKDNLE MEMTEVMFQC  120
LIRNMGMFNL NIMDLNDLGY LIDQYLKDVN RRIEILGNSR MELGESSNNV AAEASGTLAV  180
VEATTAPAAT IQQQQQFHQH VVLYERPLNL NLNHSHEQQQ QQWFMHIMNQ PQQMSHAAEQ  240
MGFPFMNDNH HQQQQQRQIP GVFSTTPTTV ISSSINPVTS SNRTNNTWFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSSRKATYKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144622.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-110AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM4DPP90.0M4DPP9_BRARP; Uncharacterized protein
STRINGBra018490.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-101AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]