PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144545.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 441aa    MW: 49943.7 Da    PI: 4.7531
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-181099194
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffkv+   ++++s+ + +p ++ +e     + +kt++l+ + g  W+v ++ ++  ++++l++GW +Fvk+n L +gDf++F ++g++ fe  +
  XP_009144545.1 10 FFKVF--ISHFSSDSMLIPISYYDELP--RHLPKTVILQGTGGCLWKVAMRLKQEEEEVYLEQGWPKFVKDNALVDGDFMTFVYNGDNIFEVSI 99
                    89999..9999999*********8775..55899****************99999999***************************999885544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-224105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-204105IPR015300DNA-binding pseudobarrel domain
CDDcd100178.08E-178100No hitNo description
PROSITE profilePS5086313.7048103IPR003340B3 DNA binding domain
PfamPF023622.2E-161097IPR003340B3 DNA binding domain
SMARTSM010198.5E-1710103IPR003340B3 DNA binding domain
SMARTSM010190.88344436IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-4352431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-5353431IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MASTDSLPRF FKVFISHFSS DSMLIPISYY DELPRHLPKT VILQGTGGCL WKVAMRLKQE  60
EEEVYLEQGW PKFVKDNALV DGDFMTFVYN GDNIFEVSIY GLDGCKQARA MAEEEEGEDS  120
ICALSSDDTE DTNAESESAN TVQRSNDKGK AKVEADDEEE EEEEDSVYSL SNSKDTDTGT  180
SSEFEMANTI LRSKTKGKSK EEVIKEESDG KEDSDHSLNS EVKETDTGSE SKIPKNKGKK  240
KKEVVESSDS DYAEEFGRLD LDLEEDSTSS DSSYAPDSDE DTATHVKRKV VTKGSQGKSK  300
VIKDVSEVGD TSCAVERVPK TREKVKAIIE NPEVYLDDPT NIHFETGVKN RKYELLVHAQ  360
LVKDYCLRFK DYIYYLDPKG KLEAKTAKWK DQRVCIKKWV KICDRNKLKK QDRVVCELLR  420
NKDLVYAVKI HIIRGKHLVS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1611053104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144545.10.0PREDICTED: B3 domain-containing protein At4g34400 isoform X1
SwissprotQ9SZ051e-123Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLM4DPT90.0M4DPT9_BRARP; Uncharacterized protein
STRINGBra018530.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-102B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]