PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144472.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 348aa MW: 38470.9 Da PI: 6.0616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.1e-10	195	243	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq XP_009144472.1 195 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 243 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.50E-11	190	247	No hit	No description
SuperFamily	SSF47459	4.84E-17	190	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-16	193	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-7	195	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGGENNEGEM GFKHVDDESG ISRVGVTSTD HFFSSVDWDP VVSGGGFSSS HYTSMVMDNP 60 GMSCFPHYQT GSGYPDMPPS LLPFGDCVGG GPVLGSDKKG ESVGRLIRAG ESHQVSDDVV 120 LGASPSRKRR QLEAESSQRN KKAVEEFLEE PQRGSDQSQK KHKNDQSKEK ESSQSEEAPE 180 KNYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ 240 SLQQQVEFLS MKLATVNPEL NIDIDRILAK DIMQSRDVRT TPTLGLNPFS GFQGTIPNVP 300 TTTNSQYNPL HQTTLESELQ SLYQMGFVSN PSTMSSFSPN NGRLKPEL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGGENNEGEM GFKHVDDESG ISRVGVTSTD HFFSSVDWDP VVSGGGFSSS HYTSMVMDNP  60
GMSCFPHYQT GSGYPDMPPS LLPFGDCVGG GPVLGSDKKG ESVGRLIRAG ESHQVSDDVV  120
LGASPSRKRR QLEAESSQRN KKAVEEFLEE PQRGSDQSQK KHKNDQSKEK ESSQSEEAPE  180
KNYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ  240
SLQQQVEFLS MKLATVNPEL NIDIDRILAK DIMQSRDVRT TPTLGLNPFS GFQGTIPNVP  300
TTTNSQYNPL HQTTLESELQ SLYQMGFVSN PSTMSSFSPN NGRLKPEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	130	SRKRRQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144472.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189519	0.0	AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144471.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
Refseq	XP_009144472.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
Refseq	XP_018514491.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
Swissprot	Q6NKN9	0.0	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A397YFA4	0.0	A0A397YFA4_BRACM; Uncharacterized protein
STRING	Bra018461.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]