PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144317.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 373aa    MW: 42136.7 Da    PI: 7.0563
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30154211260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++v+ei+Y+g Hnh+k
  XP_009144317.1 154 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQVTEIIYKGGHNHPK 211
                     8***************************************9.***************85 PP
2WRKY103.31.3e-32309365359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versaed+++v +tYeg+Hnh+
  XP_009144317.1 309 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSAEDERAVLTTYEGRHNHD 365
                     9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-24151212IPR003657WRKY domain
SuperFamilySSF1182907.85E-23152212IPR003657WRKY domain
SMARTSM007741.6E-30153211IPR003657WRKY domain
PROSITE profilePS5081120.484154212IPR003657WRKY domain
PfamPF031061.8E-22154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-34292367IPR003657WRKY domain
SuperFamilySSF1182901.96E-28299367IPR003657WRKY domain
PROSITE profilePS5081134.188302367IPR003657WRKY domain
SMARTSM007744.2E-37307366IPR003657WRKY domain
PfamPF031061.1E-25309365IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSSTSFSDLL ASSGVDCYEQ DEDFLGGFYP KRTGSGLPKF KTAQPPPLPI SQASHGFSFS  60
ELLDSPLLLS SSHSLISPTT GAFPYQGFNG TNNHLDFPWQ LQTQPQPPNA SSALQETYVV  120
QAIQKKQEDP VHREFGSDHQ VKVPSYMVVG RNSNDGYGWR KYGQKQVKKS ENPRSYFKCT  180
YPNCVSKKIV ETASDGQVTE IIYKGGHNHP KPEFTKRPSG SRRMFNPSSV VSETHDQSEN  240
SSISFEYSDL EQKSFRSEYG EVEEEEEQPE IKRLKREGED EGMSVEVSRG VKEPRVVVQT  300
ISEIDVLLDG FRWRKYGQKV VKGNTNPRSY YKCTYQGCGV RKQVERSAED ERAVLTTYEG  360
RHNHDVPTSL RRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32154367877Probable WRKY transcription factor 4
2lex_A2e-32154367877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.31741e-103leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144317.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300430.0KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288877.10.0probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLM4DP840.0M4DP84_BRARP; Uncharacterized protein
STRINGBra018325.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]