PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144238.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 454aa    MW: 50927.7 Da    PI: 4.6721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12251292854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + N++f+ L++l+P++     +K++ a+i+ +A++YIk+L
  XP_009144238.1 251 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 292
                     59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.596243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13245307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-12251304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9251292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-11252297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MENLNTDFVT NAEERENLYE EEMACFDSAE VTAESSAVPP PPPPQTLVTG STSNSNCSVD  60
VEDLPEFHLS PQDCPPQPSS TPLQFHINPL PPCDNQYQIH QMSHDQLQQQ HANWDNGYQD  120
FVNLGPNSST TPDLLSLLHL PRCSLPQSML PNSFSDIMSS SSAAAVMYDP LFHLNFPLQT  180
RDQSQQRNSS CFLGVEDQIQ MDANGGGGGI NMMYYEGDNN NDGFDNGVIE FSSGGNNRKG  240
RGSGKSRTFP TERERRVHFN DRFSDLKSLI PNPTKNDRAS IVGEAIDYIK ELLRTIEDLK  300
MLVEKKKFGR FRSKKRARVG GEEEEEEEEG DNVVYRPKSE GDQSCFSNNK ALRCSWLKRK  360
SKVTEVDVRI IDDEVTIKVV QKKKINCLLF TTRVLDQLQL DLHHVAGGQI GEHYSFLFNT  420
KICEGSCVYA SGIADTVMEV VEKQYMEAVP ANGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144238.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144238.10.0PREDICTED: transcription factor bHLH10-like isoform X1
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLM4DP300.0M4DP30_BRARP; Uncharacterized protein
STRINGBra018270.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-172bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]