PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143918.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 478aa    MW: 52242.6 Da    PI: 6.6002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.4e-114166126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+ff+rtG+C yG++C+++H+
  XP_009143918.1 41 PGERDCQFFLRTGQCGYGNTCRYNHP 66
                    5789*********************9 PP
2zf-CCCH36.39.6e-1287111327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG++Ck++H++
  XP_009143918.1  87 QPDCEYFLKTGACKYGSTCKYHHPK 111
                     789********************96 PP
3zf-CCCH28.23.3e-09132155326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+++++ G C++G  CkF+H+
  XP_009143918.1 132 EKSCPYYMQKGMCRFGVACKFHHP 155
                     667********************8 PP
4zf-CCCH35.41.8e-11270294327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Crff+ tGtCkyGd Ck+ H++
  XP_009143918.1 270 RAECRFFMNTGTCKYGDDCKYTHPR 294
                     799********************95 PP
5zf-CCCH28.82.1e-09314337327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C +fa  G+CkyG++CkF H++
  XP_009143918.1 314 KPACGNFAS-GYCKYGANCKFDHPM 337
                     689*****9.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-64067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.544068IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-84266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-64469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-684111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89684112IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-987111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-689112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-490110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6128158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469129157IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4129156IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4134155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7267296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187268295IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7268294IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9270294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-7273295IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6311337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389311338IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7313337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSETQQVQNS TGSIRSSENI EDTFRRMEVN EEQSSQYPDR PGERDCQFFL RTGQCGYGNT  60
CRYNHPLSHL PQGVFYQRDD LPERIGQPDC EYFLKTGACK YGSTCKYHHP KDRNGAGPVL  120
FNVLGYPMRQ GEKSCPYYMQ KGMCRFGVAC KFHHPHSNPQ PHNGSHATTY GMSNFPSVGF  180
PYAGGLPMMS MPPATYGVMP PPGTYGGAMP RPQVPHPQTY MPFMVPPPQG WSTYMAGSNP  240
IYNVKTQLYS SSSASVPVAV TSHQHSVSER AECRFFMNTG TCKYGDDCKY THPRERMLSP  300
NLLNPIVLPA RSGKPACGNF ASGYCKYGAN CKFDHPMPLN PYDGTGLTMP SLPTAYAIPV  360
TTHLPSRSDS NALSNGSKPA TENHTSETEK QDDKSEVQDP SQLSGSDSTA ISNGNKPATE  420
NETSETEVTE KSEVQGSSDS AALSNGNSGA ESPSSETKKQ EDNPSQPDNS GNQDSSDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143918.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLM4CMV50.0M4CMV5_BRARP; Uncharacterized protein
STRINGBra005543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2