PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009143674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 223aa MW: 24319.7 Da PI: 6.4984 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.7e-06 | 75 | 100 | 1 | 26 |
--S---SGGGGTS--TTTT.T-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGd.rCkFaHg 26 +kt+lC++f++ G C+y + +C+FaH+ XP_009143674.1 75 FKTKLCCNFRA-GSCPYAAsTCHFAHS 100 69*********.*****7527*****7 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 171 | 196 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C+ + +G+C++G +C+FaHg XP_009143674.1 171 WKTRMCNKWEMSGYCPFGTNCRFAHG 196 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 72 | 107 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.49E-5 | 73 | 106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.662 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 74 | 101 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 115 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.41 | 115 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-7 | 115 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-8 | 116 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-16 | 168 | 200 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-10 | 169 | 201 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-7 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 171 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSHRRDSTTD AVHVIPTNDP PPENPFPSPV WAATEDDYSR LSAANNDDTE SPCKKTRGSP 60 SPSSSSSSEI GKAFFKTKLC CNFRAGSCPY AASTCHFAHS AEELRRPTAG ESVRPYKGRH 120 CKKFYSGEGC PYGESCTFLH DEASRNRESF AVSLGHRGGG NVIAAAASPN WKTRMCNKWE 180 MSGYCPFGTN CRFAHGASEL HRFGGGLVEE EEEEEEEGLH SGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009143674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953556 | 0.0 | EU953556.1 Zea mays clone 1434304 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018514785.1 | 1e-157 | PREDICTED: zinc finger CCCH domain-containing protein 28 isoform X1 | ||||
Swissprot | Q9LQM3 | 2e-76 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | M4CMA4 | 1e-155 | M4CMA4_BRARP; Uncharacterized protein | ||||
STRING | Bra005342.1-P | 1e-156 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-63 | C3H family protein |