PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143672.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 269aa    MW: 29340.4 Da    PI: 8.212
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-0675100126
                     --S---SGGGGTS--TTTT.T-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGd.rCkFaHg 26 
                     +kt+lC++f++ G C+y + +C+FaH+
  XP_009143672.1  75 FKTKLCCNFRA-GSCPYAAsTCHFAHS 100
                     69*********.*****7527*****7 PP
2zf-CCCH38.91.4e-12171196126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C+ +  +G+C++G +C+FaHg
  XP_009143672.1 171 WKTRMCNKWEMSGYCPFGTNCRFAHG 196
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1372107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-573106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66274102IPR000571Zinc finger, CCCH-type
SMARTSM003560.001374101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314115143IPR000571Zinc finger, CCCH-type
SMARTSM003560.41115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7115142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8116142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-16168200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-10169201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432170198IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7170197IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8171196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSHRRDSTTD AVHVIPTNDP PPENPFPSPV WAATEDDYSR LSAANNDDTE SPCKKTRGSP  60
SPSSSSSSEI GKAFFKTKLC CNFRAGSCPY AASTCHFAHS AEELRRPTAG ESVRPYKGRH  120
CKKFYSGEGC PYGESCTFLH DEASRNRESF AVSLGHRGGG NVIAAAASPN WKTRMCNKWE  180
MSGYCPFGTN CRFAHGASEL HRFGGGLVEE EEGKIGTSST LDTKKTGQYS LASPGVPSQR  240
ASNGVRVVRK WKGPDRISRV YGDWIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9535560.0EU953556.1 Zea mays clone 1434304 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514785.10.0PREDICTED: zinc finger CCCH domain-containing protein 28 isoform X1
SwissprotQ5PP652e-96C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
SwissprotQ9LQM32e-95C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLM4CMA40.0M4CMA4_BRARP; Uncharacterized protein
STRINGBra005342.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.17e-88C3H family protein