PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143518.1
Common NameWRKY44
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 387aa    MW: 42588.2 Da    PI: 9.0553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27162213354
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                     DgynWrKYGqK+vkgs+ pr+YY+Ct+++Cpvkk vers+  ++v ei+Y+g
  XP_009143518.1 162 DGYNWRKYGQKQVKGSDSPRGYYKCTHPKCPVKKSVERSSMGGHVSEIVYQG 213
                     9*************************************************98 PP
2WRKY99.91.5e-31306363259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK v g+ +prsYYrCts +C+++k+ver+++dpk++++tYeg+Hnh+
  XP_009143518.1 306 EDGFKWRKYGQKAVGGNAYPRSYYRCTSVNCRARKRVERANDDPKAFITTYEGKHNHH 363
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-23155213IPR003657WRKY domain
SMARTSM007742.9E-23160216IPR003657WRKY domain
SuperFamilySSF1182906.41E-21160215IPR003657WRKY domain
PROSITE profilePS5081120.151162213IPR003657WRKY domain
PfamPF031063.5E-20162213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-31295364IPR003657WRKY domain
PROSITE profilePS5081129.861300362IPR003657WRKY domain
SuperFamilySSF1182901.31E-26301364IPR003657WRKY domain
SMARTSM007742.2E-36305364IPR003657WRKY domain
PfamPF031061.5E-25306363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDVKESERKV VAKPVASRPS CSSVRTFTDL LADSVTVSPQ SNCHETVDAS IIPKTERFKQ  60
PASASVSSPR VEGSGDVKSC DDSESKSYVI YKPKAKLVSQ ATVSALANML PGNCQQAWIK  120
REAVAYGKRV NQGTHRAVPN LVPRVPTFKE SETSTGDRSY VDGYNWRKYG QKQVKGSDSP  180
RGYYKCTHPK CPVKKSVERS SMGGHVSEIV YQGFQTPSEG SMGEEPNPLW SNQEKMNEGC  240
VITPFEFAVP RTANSTGGTS DSGCRSSQCD ERELDDPSRS KTSMKNETQS SEAGVSQSSG  300
ESDSLEDGFK WRKYGQKAVG GNAYPRSYYR CTSVNCRARK RVERANDDPK AFITTYEGKH  360
NHHHLQLRPP TSSTLPFSSP QHSNQAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26290362374Probable WRKY transcription factor 4
2lex_A6e-26290362374Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143518.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300560.0KF430056.1 Brassica rapa WRKY transcription factor 44 (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143518.10.0PREDICTED: WRKY transcription factor 44-like isoform X2
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLM4CLX30.0M4CLX3_BRARP; Uncharacterized protein
TrEMBLV5REZ20.0V5REZ2_BRACM; WRKY transcription factor 44
STRINGBra005210.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Tang J, et al.
    Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
    BMC Plant Biol., 2013. 13: p. 188
    [PMID:24267479]
  4. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  5. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  6. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  7. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]