PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143287.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 278aa    MW: 32395.2 Da    PI: 6.2804
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.7e-10155238281
                     EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T.T-EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke.gDfvv 81 
                     +k+lt+sdv++++ l+l+ + +++         +g ke+    t++ ++g++ e+ l  r k++++ lt GW +Fv++ gLke  Dfv+
  XP_009143287.1 155 QKQLTTSDVTQNR-LSLSYSQVRKKfqqllgdeSGRKES--RFTVYGPDGKVHEIWL--REKKRSFDLTIGWWSFVEQYGLKEcCDFVT 238
                     79*******9985.*********99****9976444444..69999***********..**********************96246655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0084154254IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-10154252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-9154243No hitNo description
Gene3DG3DSA:2.40.330.106.9E-9154245IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASPTQAREV HHRKEEDALD EERELIDLNK EAKHEDDDKI VASESSETRE AKKQKVEQEV  60
KDAYQEDERR GGMTRTTTPR SLTQEEAKAK EDDARASRML ASTSNDLVRP GLDINDYVDD  120
SEQTLTFLTR WKAPETPPER IIHRTLVEQC SKPIQKQLTT SDVTQNRLSL SYSQVRKKFQ  180
QLLGDESGRK ESRFTVYGPD GKVHEIWLRE KKRSFDLTIG WWSFVEQYGL KECCDFVTVW  240
MFRHSVTRRI CLAIDTTRFA FRKQVSKRIS QAAFEDSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514368.10.0PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLM4CLC80.0M4CLC8_BRARP; Uncharacterized protein
STRINGBra005015.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1630655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-30B3 family protein