PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 35860.7 Da PI: 8.9128 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 6.9e-12 | 158 | 208 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N ++ Lr+l+P++ + + + a+i+ A++++k L XP_009142453.1 158 KRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YFLRGDQASIVGGAIDFVKIL 208 79***************************9...99999**********999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-15 | 151 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.26E-10 | 155 | 213 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 156 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.145 | 157 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-9 | 158 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-7 | 163 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MERIQGQNKL CLLDQKVNVR RSLQVQASPE DHSFPLEEDQ YSTLTLQGTR LPFQQMLQDP 60 SSVLSFKDPH ILGNYLPYEV PEFHSPFHSD NNHYYQNPFL EGTNEDISSQ ELQLNPVDNA 120 FSRRKLRNNN LAASVSREKR KRRRSKPMKN REEMESQKRM THIAVERNRR RQMNVHLNSL 180 RSLIPSSYFL RGDQASIVGG AIDFVKILEQ HLQSLEAQKI TQQTSKLIID ATVTERHVSL 240 KIQYCQRKQG QLLRSIFLLE KLGLTVLHLN VTSPCNASVS YSFNLKMEED CNLGSVDEIT 300 AAVRQIFDYC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 143 | RRKLRNNNLAASVSREKRKRRR |
2 | 138 | 143 | KRKRRR |
3 | 139 | 143 | RKRRR |
4 | 139 | 144 | RKRRRS |
5 | 139 | 146 | RKRRRSKP |
6 | 158 | 169 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142453.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018514073.1 | 0.0 | PREDICTED: transcription factor bHLH70-like isoform X2 | ||||
Swissprot | O81037 | 1e-135 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | A0A078IFU7 | 0.0 | A0A078IFU7_BRANA; BnaA04g26770D protein | ||||
TrEMBL | A0A3P6CP91 | 0.0 | A0A3P6CP91_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FHA5 | 0.0 | M4FHA5_BRARP; Uncharacterized protein | ||||
STRING | Bra040483.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-136 | bHLH family protein |
Publications ? help Back to Top | |||
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