PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18604.4 Da PI: 7.8922 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 6e-39 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+apyf aeq +++fa++hk+FGasn +k+l +lp ++r da+++l yeA ar+rdPvyG+vg++++lq+q+++l+ae+ XP_009142333.1 18 PCGACKFLRRKCVSGCVFAPYFDAEQgTASFAAIHKVFGASNTSKMLLRLPLHKRLDAVATLGYEALARVRDPVYGCVGHLFSLQHQVMNLQAEI 112 7***********************9988******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_009142333.1 113 AHVQAR 118 *99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.254 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-37 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MMTTNLNGGG RGGGGEGPCG ACKFLRRKCV SGCVFAPYFD AEQGTASFAA IHKVFGASNT 60 SKMLLRLPLH KRLDAVATLG YEALARVRDP VYGCVGHLFS LQHQVMNLQA EIAHVQARLS 120 MFQRFYLVPP QQMQQPPFDL AYNNEYPMEP TNLDVGWEEE QLPQAVRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-38 | 14 | 116 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-38 | 14 | 116 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 14 | GGRGGGG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142333.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189498 | 1e-113 | AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142333.1 | 1e-124 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 3e-82 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A291LR63 | 1e-123 | A0A291LR63_BRARR; Transcription factor LBD19a | ||||
TrEMBL | M4FGT4 | 1e-123 | M4FGT4_BRARP; Uncharacterized protein | ||||
STRING | Bra040312.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-85 | LOB domain-containing protein 19 |