PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 28864.1 Da PI: 8.1257 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5e-15 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+l +d +++++ +p++f ++ + k + ++tl+ +g sW v+l + g + +kGW+eF ++n+L +++f++F+ +g+++ +v XP_009142249.1 19 FFKILADEDLSSESMRLIPNEFWRSSECK-ILPPKVTLKVAWGSSWPVNL--SPFMGCyLMERKGWEEFLNDNHLGDNEFLTFTNEGNNCI--TV 108 99*********************998443.45668***************..66665525666*********************6666665..88 PP EEE-S CS B3 95 kvfrk 99 +f+k XP_009142249.1 109 DIFQK 113 88876 PP | |||||||
2 | B3 | 50.9 | 2.7e-16 | 173 | 252 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +l++p +fa+eh+ k + ++ ++ d++g+ Wev + + g+ ++++GW+ ++ gL +gD ++F+l++ +e+v+ v XP_009142249.1 173 SHLTLLSIPVTFAKEHMPK-VR-TKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDLCTFRLVRP--KEMVLEV 252 445679**********644.33.58***************..9999999************************9874..3345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-16 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.82E-14 | 18 | 111 | No hit | No description |
SMART | SM01019 | 4.6E-13 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-13 | 19 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.323 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 157 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-20 | 159 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.816 | 163 | 256 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-14 | 166 | 256 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.33E-13 | 166 | 253 | No hit | No description |
Pfam | PF02362 | 2.2E-13 | 171 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MARNIAFGRI QEDVNKTSFF KILADEDLSS ESMRLIPNEF WRSSECKILP PKVTLKVAWG 60 SSWPVNLSPF MGCYLMERKG WEEFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCVEILK 120 PLNTSSSNVK NEEMSCVDPV IAESNKRKVD SNVYGASSSS SSAATFSLTI KKSHLTLLSI 180 PVTFAKEHMP KVRTKFVIHD PKGKPWEVVY VPSNGSKLFS SGWRFLANGY GLAVGDLCTF 240 RLVRPKEMVL EVLHASP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142249.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142249.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g18090-like | ||||
TrEMBL | A0A397ZXJ5 | 0.0 | A0A397ZXJ5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F9A0 | 0.0 | M4F9A0_BRARP; Uncharacterized protein | ||||
STRING | Bra037663.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 1e-52 | B3 family protein |