PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142041.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 579aa    MW: 64377.5 Da    PI: 9.9908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-111365147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     ++ W t+E++ll++av+++G+++W +++++++        +t+  c++++ ++
   XP_009142041.1 13 KQTWGTWEELLLACAVHRHGTESWPSVSAEIQkrtrnlSSLTASACRHKYSDL 65
                     789*****************************988888888888999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.25E-5968IPR009057Homeodomain-like
SMARTSM007171.4E-51268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-41249IPR009057Homeodomain-like
PfamPF002492.8E-111365IPR001005SANT/Myb domain
CDDcd001675.73E-51562No hitNo description
SuperFamilySSF473704.58E-16216337IPR001487Bromodomain
SMARTSM002972.6E-15228337IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.7E-14236346IPR001487Bromodomain
PfamPF004395.0E-11243322IPR001487Bromodomain
CDDcd043692.20E-15245332No hitNo description
PROSITE profilePS5001411.436247318IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAKPENDDVS PEKQTWGTWE ELLLACAVHR HGTESWPSVS AEIQKRTRNL SSLTASACRH  60
KYSDLKRRFT QEMTSPESEI SSVPWLEKLR RIRVDELRRE VERYDLSISS LRSKVKRLEE  120
ETSSHLDKKE LRRESDRDGG ELVPISPDPV DISSEMAGAV DGGGEAKLTE DDSCRGSCEK  180
ESGVNSERRI RLTESMAESE GGVNRGEEEG KETSDVQSSA SLPRKGTSEV DNEDRSQPSI  240
SFVEMLLSHP CGYLFSRRLE TQETPEYGKI IRQHVDFEMI RKLDEEGLYK SSMTKLFRDL  300
LLLINNAKVF YHKGSSEFNS AEQLHQLVKK QMATTLQREL PPPKEKSLEL VSFKEAVAVT  360
SKPRISLPIV ACGKRSSLAS KPLLMISPSG GDKKGKKTDQ VVDDEKLVLL KDEETSGKDD  420
ESLVLRKMVR GKTSTAKKVV TRNVKNSGSS LNEVKTTDEE KKGNQSGSSK RKSVANFLKR  480
MKGGGSSSDT VVETLMPSSE QKKNNIRKAD AKKRATGENK TNEKASPVKK KNNGRALKGE  540
AAPSSSSPVV AKRSRESGEK KEASSSSPSS TRSKKRARR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.211240.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142041.10.0PREDICTED: uncharacterized protein LOC103865927 isoform X2
TrEMBLM4DK650.0M4DK65_BRARP; Uncharacterized protein
STRINGBra016893.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.10.0DNA-binding bromodomain-containing protein