PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142026.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 696aa    MW: 76333.1 Da    PI: 5.976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08285305526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C FaHg
  XP_009142026.1 285 PCPDFRK-GACRRGDMCEFAHG 305
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002048.04E-1537169No hitNo description
SuperFamilySSF484031.06E-1538169IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1640174IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-1075146IPR020683Ankyrin repeat-containing domain
SMARTSM002480.06179109IPR002110Ankyrin repeat
PROSITE profilePS5029718.5179180IPR020683Ankyrin repeat-containing domain
PRINTSPR014152.4E-58095IPR002110Ankyrin repeat
SMARTSM002480.0054112144IPR002110Ankyrin repeat
PROSITE profilePS5008812.636112147IPR002110Ankyrin repeat
PRINTSPR014152.4E-5131145IPR002110Ankyrin repeat
SMARTSM003562.7E-6280306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638285307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5285307IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5285305IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.906315339IPR000571Zinc finger, CCCH-type
SMARTSM0035643315338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MCCGSDQLNQ ISSPEDTTTN TEMNHLRVET EDTFASLLEL AANNDVEGVR LSIDRDPSCV  60
DEPGLWYGRQ KGSKAMVNDH RTPLMVAATY GSIDVIKLIL SLTVVNRACG SDQTTALHCA  120
ASGGAVNAVQ VVKLLLAAGA DLNLMDADGQ RAGDVIVVPP KLEGVKLMLQ ELLSAATAER  180
NLRVVTNVRT SRSNSPNEEE YGDGDGESPF KMKSSTEFKK EYPVDPSLPD IKNSIYSTDE  240
FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPDFR KGACRRGDMC  300
EFAHGVFEFW LHPAQYRTRL CKDGTGCARR VCFFAHIPEE LRPLYESTGS AVLSPRSNAD  360
FAAALSLLPP GSPSGVSVMS PLSPSSGGNG MSSMAWPQPN VPALQLPGSN LRSSRLRSSF  420
NARDEINMLA EYEQQQLLNE FNSSLSRSGR MKSLPPSNLE DLFSAESSSS PRFNDSALAS  480
AVFSPTHKSA VFNQFQQQQQ QQSMLSPINT SYSSPKSVDH SLFSGGGRMS PRNVVEPISP  540
MSSRVSMLAQ CVKQQQQQQQ QQQQQQNQFR SLRSREQLRT SSSPIVGSPV NNNNNNNAWS  600
SQWGSSNGKP DWGMSSEAAA LGKLSFDGGV EPDVSWVQSL VKENSTEAKE NAAGTSSNTG  660
QNTMQQPTTS EMVMDHAGLE AWIEQMQLDQ FVAQQN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.310700.0bud| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895680.0AC189568.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142026.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM4DK750.0M4DK75_BRARP; Uncharacterized protein
STRINGBra016903.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]