PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141913.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 312aa MW: 35054.8 Da PI: 6.9991

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.1	1.5e-27	120	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+Y+rCt++ gC+++k+v+rs+edp ++ei+Y+g H ++ XP_009141913.1 120 LDDGFSWRKYGQKDILGAKFPRGYHRCTYRksqGCEATKQVQRSNEDPMLFEIIYRGIHSCS 181 59*************************98889***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-25	117	182	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-24	119	182	IPR003657	WRKY domain
PROSITE profile	PS50811	21.299	120	179	IPR003657	WRKY domain
SMART	SM00774	2.1E-39	120	182	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	121	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MERNSNGREW EKMKKELNEL MTEGRDYAQQ LKSQLGSTSS QESREHLAKK ILESYHKSLT 60 IMNYSGELDQ VSPHSHGTGS PKSDDSDHQE PHIIQSSKKL MPRWTRKVRI APGVVIDRAL 120 DDGFSWRKYG QKDILGAKFP RGYHRCTYRK SQGCEATKQV QRSNEDPMLF EIIYRGIHSC 180 SQASNVGSTI PVQVLDPNQI QEQENLEIGK ASLDTGHHNY NHQAHLHQTL NYILPSTLNL 240 ESTNVMLQEK DHNIGFLGST SYSDANYNFL ASHDAGSASH STSNSPSTVG LESPFENFGP 300 SHPFVGFGGF YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-19	114	178	8	74	Disease resistance protein RRS1
5w3x_D	2e-19	114	178	8	74	Disease resistance protein RRS1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269\|PubMed:22268143}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SUP6}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141913.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:22268143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430047	0.0	KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141913.1	0.0	PREDICTED: probable WRKY transcription factor 30
Swissprot	Q9FL62	1e-143	WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBL	M4ECF8	0.0	M4ECF8_BRARP; Uncharacterized protein
STRING	Bra026467.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12595	19	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-145	WRKY DNA-binding protein 30

Publications ? help Back to Top
Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Kanofsky K,Bahlmann AK,Hehl R,Dong DX Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. Plant Cell Rep., 2017. 36(6): p. 971-986 [PMID:28341984]