PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141871.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 260aa    MW: 29380.3 Da    PI: 5.472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.5e-11130221282
                     EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                     +k+lt sdv +  +rl+l k+ +++            +gk +e+ +++++ ++g  +++++k+  ++ + + vlt+GWk+Fv++ +L+  +Df++
  XP_009141871.1 130 KKQLTMSDVENGqCRLMLGKQQVQKKmlpllehseipQGK-TEGLDVSVYGPNGevQTMKFKM--WGED-TPVLTSGWKDFVDEYKLEkHRDFLT 220
                     5899999999887**********999*******9996444.5778*********666666666..9997.679**************97899998 PP

                     E CS
              B3  82 F 82 
                     +
  XP_009141871.1 221 I 221
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.10E-13129225No hitNo description
SMARTSM010191.8E-6129236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-14130227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-14130235IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVTSNEETTS VVIAQEDREA AETLIKLSQD TRYQPVEEED AAPSSTLSLQ QVSKAPQKSC  60
SCEKCKAKEK QHSKKDDKIS MESTKGKTEV DDTDETLMIL QEWSHTNPDP VKKLFNGAAD  120
VAELFSEPIK KQLTMSDVEN GQCRLMLGKQ QVQKKMLPLL EHSEIPQGKT EGLDVSVYGP  180
NGEVQTMKFK MWGEDTPVLT SGWKDFVDEY KLEKHRDFLT IWMFRHRVTR GICFAIDSTR  240
FSVTGPLSSR ISKSVFPNPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141871.10.0PREDICTED: putative B3 domain-containing protein At4g03170
SwissprotQ9ZR143e-52Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLM4DKJ80.0M4DKJ8_BRARP; Uncharacterized protein
STRINGBra017028.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-53B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]