 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009141492.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bZIP |
| Protein Properties |
Length: 213aa MW: 23487 Da PI: 5.1188 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009141492.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 32.8 | 1.6e-10 | 129 | 168 | 24 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
++ae++eL++++++L +eN +L++e+++l+ ++++l+se+
XP_009141492.1 129 FQAECDELAQRAEVLNEENASLREEINKLRSQCEELTSEN 168
59************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006302 | Biological Process | double-strand break repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MELTLKVGRV LLMVQVKEVM QTLKIPLYNS GSGGSANGPR DGSVGCQTVP VMPMTAAGVP 60
APPTNLNIGV LLLQHLHQFM ESLLQCHEMV AVHSLGYRLR KQVLTPKHRF SKLKSPPCEQ 120
IMDMVLCVFQ AECDELAQRA EVLNEENASL REEINKLRSQ CEELTSENNS LKDQLLSFPT 180
LEGVAMDKDE QEPPDTNQTG VAETKADSSK DSK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT2G35530.1 | 3e-54 | basic region/leucine zipper transcription factor 16 |
