PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141415.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 292aa    MW: 33248.2 Da    PI: 9.3711
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1619110196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f k++  +d +++++ ++p + +++  + +  s ++++  ++g sWev +  +k+++  y+ ++GW++Fv++n L  ++fv+F+++g+++f   v
  XP_009141415.1  19 FSKTFACADLSSECMRTFPFDLMKSLPK-EDLSNKMVIIAKWGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMCF--DV 108
                     6778888899999999999999988853.458889***************..******566669**********************99999..55 PP

                     EE CS
              B3  95 kv 96 
                      +
  XP_009141415.1 109 NI 110
                     44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1613114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1714118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-1518111No hitNo description
PROSITE profilePS5086311.61719114IPR003340B3 DNA binding domain
SMARTSM010198.4E-1719114IPR003340B3 DNA binding domain
PfamPF023629.9E-1419109IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-11187280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-10189281IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248189283IPR003340B3 DNA binding domain
CDDcd100173.63E-7190273No hitNo description
SMARTSM010192.2E-6192283IPR003340B3 DNA binding domain
PfamPF023621.2E-7195274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDMNNWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG  60
SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR  120
PPTMASSSGI KQEQGASMEG VEFEATDKKA EESKKKIKIK NVVNSVEIGE SSRGVKKVKR  180
GRVRVKNGVP EFEITIKRSG LGHVTIPNLF KKQIPNEQTM FTIHSKGSGG GSWEVWCLVR  240
EAQATFSRGW SKLAREYPLE IGDKCTLQLI KPNECVLTIT NKAKEEEITV ID
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141415.10.0PREDICTED: B3 domain-containing protein At3g17010-like
RefseqXP_009141417.10.0PREDICTED: B3 domain-containing protein At3g17010-like
TrEMBLM4DZJ60.0M4DZJ6_BRARP; Uncharacterized protein
STRINGBra021943.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.17e-80B3 family protein