PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009141320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29262.1 Da PI: 8.0289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.1 | 2e-50 | 14 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+++di+k++PwdLp e+e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ XP_009141320.1 14 LPPGFRFHPTDEELVVQYLCRKVTGLPLPA-SVIPDIDICKADPWDLPGD---CESERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGG- 103 79****************************.99***************44...46799**********************************87. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvg+kktLvfykg+ p+g++t+Wv+heyrl XP_009141320.1 104 -NKLVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 135 .889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-59 | 10 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 14 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-26 | 15 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEKLSSIKNR GLRLPPGFRF HPTDEELVVQ YLCRKVTGLP LPASVIPDID ICKADPWDLP 60 GDCESERYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGGNKLVGMK KTLVFYKGKP 120 PNGTRTNWVL HEYRLLDSQQ ESYGENTNWV LCRVFLKKTS NTSNKRKEDE KEINEEKEND 180 EDDNKSACPI FYDFLRKDKK RKRCCDLNVT PTCCCCCSAS ASSSVCSSAL TQTSTHNDSD 240 YHEEITCREI KFCLFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-55 | 12 | 160 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-55 | 12 | 160 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-55 | 12 | 160 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-55 | 12 | 160 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 12 | 160 | 18 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-55 | 12 | 160 | 15 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-55 | 12 | 160 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009141320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189292 | 0.0 | AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence. | |||
GenBank | AC189651 | 0.0 | AC189651.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS011C02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141320.1 | 0.0 | PREDICTED: NAC domain-containing protein 41-like | ||||
Swissprot | O22798 | 1e-113 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A078HH97 | 0.0 | A0A078HH97_BRANA; BnaA04g19530D protein | ||||
TrEMBL | A0A397ZPI6 | 0.0 | A0A397ZPI6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DZA9 | 0.0 | M4DZA9_BRARP; Uncharacterized protein | ||||
STRING | Bra021856.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-109 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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