PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141281.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 408aa    MW: 44536.5 Da    PI: 6.3151
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-114469126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C++f+rtG C yG++C+++H+
  XP_009141281.1 44 PGERDCHYFMRTGKCGYGSSCRYNHP 69
                    5789*********************9 PP
2zf-CCCH37.34.6e-1290114327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG+ Ck++H++
  XP_009141281.1  90 QPDCEYFLKTGACKYGAACKYNHPK 114
                     789********************96 PP
3zf-CCCH314.4e-10135159327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+++++ G C++G  CkF+H++
  XP_009141281.1 135 EKSCPYYMQKGMCRFGVACKFHHPQ 159
                     667********************97 PP
4zf-CCCH42.11.4e-13228251427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+ff++tGtCkyGd+Ck++H++
  XP_009141281.1 228 AECSFFMKTGTCKYGDNCKYSHPK 251
                     79********************96 PP
5zf-CCCH34.53.4e-11274297326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C +f ++G+CkyG++CkF H+
  XP_009141281.1 274 LPACGNFKAYGFCKYGANCKFDHP 297
                     589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4554371IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-54370IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-44969IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84987115IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-1090114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-493113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6131160IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638132160IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-7134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4137158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.38224252IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-9225251IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11227251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7228253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6230251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6267297IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779271299IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8274297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4277296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSETPQVQNS TGSIPSSDKT EDTLTKVKVN EENMDEPSLF PDRPGERDCH YFMRTGKCGY  60
GSSCRYNHPV SHVPEAVFYH REELPERVGQ PDCEYFLKTG ACKYGAACKY NHPKDRNGAG  120
PVLFNALGYP MRQGEKSCPY YMQKGMCRFG VACKFHHPQT HNAQPTSFPF GGSLPVMSLA  180
PATYEAMSRP QALHPQAYSF MVAPPQGWST FMGGYDMKTE LDSSSEKAEC SFFMKTGTCK  240
YGDNCKYSHP KERMLLSPPP NLFNPVVLPA RPGLPACGNF KAYGFCKYGA NCKFDHPVPV  300
NTYNNTGSTM PSPPSAYAPP VSTPVRITSP PGRSNGGDKP AAEDNSSETV KEEDGPDKAE  360
VHDSSQLSHG STALSNDAEN PGPETKKEDD DPLPADNSGK QESSDNSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141281.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141281.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
RefseqXP_013744420.10.0zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-170C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A397ZR980.0A0A397ZR98_BRACM; Uncharacterized protein
TrEMBLM4DZ700.0M4DZ70_BRARP; Uncharacterized protein
STRINGBra021817.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-154zinc finger nuclease 2