PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009141141.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 441aa MW: 49651.6 Da PI: 5.341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.7e-11 | 234 | 275 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L+ l+P++ +K + a+i+ +A++YIk+L XP_009141141.1 234 TERERRVHFNDRFFDLKNLIPNP-----TKSDRASIVGEAIDYIKEL 275 59*********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-13 | 218 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.126 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-9 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 234 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 234 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.79E-11 | 235 | 280 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEEERGSIYE EMPCFDPNTP ASVTAESSFS QVQPPQILVA GSTSNSNCSL DVEEFHLSPQ 60 DSSTPFQFHI NPLPPPPCEN QYNLIHQMSH NQQQHSNWDN GYQDFNNMCP NSTTTPDLLS 120 LLHLPRCSLP LPNSSISFSD IMSSSSAAAV MYDPLFHLNF PLQPRDNNPL PNGSCLLGVE 180 EQIQMDANGG GINMMYYEPG NNNNGGFESG AFEFGNGGNN RRGRGSGKSR TFPTERERRV 240 HFNDRFFDLK NLIPNPTKSD RASIVGEAID YIKELLRTIE EFKMLVEKKK FGKFRSKKKA 300 KTGGEEDLEV EQEEDNVSYR PQSEVDQSCF NKKNNNKSLR CSWLKRKSKV TEVDVRIIDD 360 EVTIKVVQKK KINCLLFTTK VLDQLKLDLH HVAGGQIGEH YSFLFNTKIC EGSCVYASGI 420 ADTVMEVVEK QYMEAVPTNG Y |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00285 | DAP | Transfer from AT2G31220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009141141.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141141.1 | 0.0 | PREDICTED: transcription factor bHLH10 isoform X1 | ||||
Swissprot | Q84TK1 | 0.0 | BH010_ARATH; Transcription factor bHLH10 | ||||
TrEMBL | M4DYW4 | 0.0 | M4DYW4_BRARP; Uncharacterized protein | ||||
STRING | Bra021711.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 1e-174 | bHLH family protein |
Publications ? help Back to Top | |||
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