PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140576.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 24628.3 Da PI: 8.7133 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.1 | 1.3e-17 | 6 | 89 | 7 | 93 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +d+l + r +l+ +f++++g+ k++ +tl ++g +W+v+l +k++++ l+kGWk+F+kangLk+g+ ++++ + +++ ++ XP_009140576.1 6 AHDSLIKYRQYLSVPFMRANGMTKPG--LITLVGKDGAKWKVNLYEEKSGSSLCLGKGWKDFAKANGLKTGEYFTLESAW-KNEIPM 89 56777777899*********999766..7***************44777777************************9666.444455 PP | |||||||
2 | B3 | 43.7 | 4.8e-14 | 136 | 220 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 k + l lp +f+++ g+kk + ++tl ++g +W l ++g++ + GW++F++ang+k gD++ + ++++ +++ +v+k+ XP_009140576.1 136 DVKACTLHLPSEFVTAVGIKKLG--EITLLGRDGMKWCGCL--LSRDGTVAVGVGWRNFCEANGVKLGDSFSLVFINEeEDTGPVFKFS 220 456789***********999655..8***************..999999************************9998879999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.5E-20 | 1 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.971 | 1 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-16 | 3 | 90 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.24E-17 | 5 | 92 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-16 | 9 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-18 | 12 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-15 | 124 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-16 | 125 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-13 | 127 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 127 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-12 | 136 | 220 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.70E-12 | 140 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKLKLAHDSL IKYRQYLSVP FMRANGMTKP GLITLVGKDG AKWKVNLYEE KSGSSLCLGK 60 GWKDFAKANG LKTGEYFTLE SAWKNEIPML SLVNTESASD GKERGESSKA MEKERSTDTS 120 SIVQNRVVTL ALETKDVKAC TLHLPSEFVT AVGIKKLGEI TLLGRDGMKW CGCLLSRDGT 180 VAVGVGWRNF CEANGVKLGD SFSLVFINEE EDTGPVFKFS PNSGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140576.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140576.2 | 1e-165 | PREDICTED: B3 domain-containing protein REM12-like | ||||
Swissprot | P0CAP4 | 2e-76 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A078I674 | 1e-161 | A0A078I674_BRANA; BnaA04g14590D protein | ||||
TrEMBL | A0A3P6CKX6 | 1e-161 | A0A3P6CKX6_BRACM; Uncharacterized protein | ||||
STRING | Bra032076.1-P | 1e-153 | (Brassica rapa) | ||||
STRING | Bo4g154880.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14267 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 9e-79 | B3 family protein |