PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140575.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 513aa    MW: 58827.3 Da    PI: 9.9589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.5e-14896197
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk l     + s+ l++p  f+ ++ +g +e + t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L  gD+++F+ ++++ f  +v+
  XP_009140575.1  8 FFKPL--VPGFHSH-LTIPVAFFLKYiEGRNEHKNTARLRSdASKITWEVKI--EDG-Q--KLTDGWKEFAIAHDLHIGDILIFRQEKDMAF--HVT 94
                    56666..4455666.************666667779***9968889******..333.2..4***********************7776777..776 PP

                    EE CS
              B3 96 vf 97
                    ++
  XP_009140575.1 95 LL 96
                    65 PP
2B369.54.6e-22145232897
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++l+ + l lp++f++++g++++++ +++l++e+g+sW+  l  +k sg++++++GW++F++an Lk+g + +Fkl++ s++++v+++f
  XP_009140575.1 145 PSSLRYDTLNLPRSFVRSNGLETRCGGEIVLMNEKGKSWTSAL-KQKLSGSTYIRRGWRRFCSANVLKTGGVYTFKLIH-SGRTPVLRLF 232
                     67888999***********************************.5888899**************************99.8888999887 PP
3B3758.9e-24266355596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++  +l+ + l lp kf +e+g++++++ +++l++ +gr+W+++l+ +k+ g++++t+GW++F++angL++g f++Fkl++ ++++lv+++
  XP_009140575.1 266 NITRATLRYDTLGLPMKFSRENGLDTRCG-EIVLMNDKGRTWKLTLKRKKSCGTMYITQGWRSFCSANGLRAGSFFTFKLIK-RGGTLVLRL 355
                     56777889999**************9987.****************98999999***************************9.566567665 PP
4B362.57.1e-20411507199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ +++++  k+ rl+lp +f ++hg+++e   ++tl d++g +W+  l+ + +s+r+ l +GW+eF kan +k g++++ kl+++ ++++v+k
  XP_009140575.1 411 FVTLTLKPYDVKKYRLYLPVRFSRSHGINEE--AKMTLLDKNGVKWSTDLRSEETSDRIRLVGGWQEFFKANCVKPGESIIVKLIWEGDKSCVLK 503
                     666777888999999************9955..58****************************************************9999**** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009140575.1 504 FCSK 507
                     9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-204112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914599IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-175106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-12696No hitNo description
SMARTSM010198.4E-20899IPR003340B3 DNA binding domain
PfamPF023629.3E-101692IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20131229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-19133230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.325138235IPR003340B3 DNA binding domain
CDDcd100171.12E-15138232No hitNo description
SMARTSM010191.0E-26139235IPR003340B3 DNA binding domain
PfamPF023625.6E-21144232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-22255356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21258362IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.271262359IPR003340B3 DNA binding domain
CDDcd100171.43E-21262355No hitNo description
SMARTSM010194.5E-31263359IPR003340B3 DNA binding domain
PfamPF023627.2E-22266355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-20404507IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-21407505IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-18411507IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69411508IPR003340B3 DNA binding domain
SMARTSM010191.4E-24411508IPR003340B3 DNA binding domain
CDDcd100171.43E-18411505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MRMPNKRFFK PLVPGFHSHL TIPVAFFLKY IEGRNEHKNT ARLRSDASKI TWEVKIEDGQ  60
KLTDGWKEFA IAHDLHIGDI LIFRQEKDMA FHVTLLGPSG CEFQYESCSE EENNLGRNIP  120
KKMNSKREAE SSSLDPSCFL ATIWPSSLRY DTLNLPRSFV RSNGLETRCG GEIVLMNEKG  180
KSWTSALKQK LSGSTYIRRG WRRFCSANVL KTGGVYTFKL IHSGRTPVLR LFFTESEPES  240
EERNFEKIQR KKAETSSQDP SCFVANITRA TLRYDTLGLP MKFSRENGLD TRCGEIVLMN  300
DKGRTWKLTL KRKKSCGTMY ITQGWRSFCS ANGLRAGSFF TFKLIKRGGT LVLRLSPKER  360
EDEEDCSPKA NEVESLSTES ESDEESSQNE KQIKKHRSTR KASSSLSQNL FVTLTLKPYD  420
VKKYRLYLPV RFSRSHGINE EAKMTLLDKN GVKWSTDLRS EETSDRIRLV GGWQEFFKAN  480
CVKPGESIIV KLIWEGDKSC VLKFCSKVKH ETK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140575.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A397ZSF20.0A0A397ZSF2_BRACM; Uncharacterized protein
STRINGBra032075.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]