PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140574.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 490aa    MW: 55641.9 Da    PI: 9.8207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-15692197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk l     + s+ l++p  f+++++g + e+ + +l++  s  +Wevk+  + ++ r  lt+GWkeF+ a++L+ gD+++F+  ++++  ++v++
  XP_009140574.1  6 FFKPL--LPGFHSH-LTIPVAFLKHIEGTN-EHHKAKLRSdASKITWEVKI--EDGR-R--LTNGWKEFALAHDLRIGDILIFR--QEKDLAFHVTL 91
                    66666..5667777.********8886664.44588888858889******..4444.3..9**********************..45666667776 PP

                    E CS
              B3 97 f 97
                    +
  XP_009140574.1 92 L 92
                    5 PP
2B360.52.9e-19141230597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ +l+++ l lp++f++++g++k+++ +++l++e+ +sW++ l  ++  ++ +++++GW++F+ angLk+g    Fkl++r ++++v+++ 
  XP_009140574.1 141 YVSPATLRHDKLNLPRSFVRANGLEKRCG-DIVLMNEKCKSWTLAL--KQELCGnTYIRRGWRSFCTANGLKTGSLYSFKLIKR-GRSPVLRLS 230
                     567888999****************9998.****************..555555599************************994.555676665 PP
3B375.37.2e-24290378696
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++++l+ +rl+lpk+f++++g++++++ +++l +e+g sW+++l+ +++ g++++t+GW++F++ ngL++g f++Fkl++r +++lv+++
  XP_009140574.1 290 VTPSSLQDDRLTLPKSFVKANGLETRCG-EIVLINEKGISWKLNLKPKRSCGTMYITRGWRSFCRVNGLRAGSFFTFKLIQR-RGTLVLRL 378
                     7899999****************99887.****************99999999***************************95.55566655 PP
4B357.42.6e-18386479196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++++++l+s  l lp +f+++hg++  e++++tl d++g +W  +l+ +k+s+r+ l +GW++F +an ++ g+++v+kl+++ ++++v+k
  XP_009140574.1 386 FVTLTLNPSNLTSYPLFLPLHFTKRHGIN--EKTKMTLLDKNGVKWFTNLRSEKTSDRVRLVGGWQDFFEANCVEIGESIVLKLIWEGDKSCVLK 478
                     677788999999999***********999..4569***************************************************988877776 PP

                     E CS
              B3  96 v 96 
                     +
  XP_009140574.1 479 F 479
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.703395IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-194102IPR015300DNA-binding pseudobarrel domain
CDDcd100178.97E-16492No hitNo description
Gene3DG3DSA:2.40.330.101.7E-205107IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-19695IPR003340B3 DNA binding domain
PfamPF023621.1E-101489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19132230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16135235IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-16135229No hitNo description
PROSITE profilePS5086314.438137233IPR003340B3 DNA binding domain
SMARTSM010198.9E-21137233IPR003340B3 DNA binding domain
PfamPF023621.1E-17140229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-21278377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-21283378IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.792285382IPR003340B3 DNA binding domain
CDDcd100172.71E-22285378No hitNo description
SMARTSM010191.7E-27286382IPR003340B3 DNA binding domain
PfamPF023621.5E-21289378IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-18380478IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-20383475IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-17385479No hitNo description
PROSITE profilePS5086313.014386483IPR003340B3 DNA binding domain
PfamPF023622.7E-17386479IPR003340B3 DNA binding domain
SMARTSM010191.7E-20386483IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVIKHFFKPL LPGFHSHLTI PVAFLKHIEG TNEHHKAKLR SDASKITWEV KIEDGRRLTN  60
GWKEFALAHD LRIGDILIFR QEKDLAFHVT LLGPSGCEIQ YESCSEEKNN IGNIPKKKKV  120
KKNPRKETES TSLDPSCFVA YVSPATLRHD KLNLPRSFVR ANGLEKRCGD IVLMNEKCKS  180
WTLALKQELC GNTYIRRGWR SFCTANGLKT GSLYSFKLIK RGRSPVLRLS STESELEEES  240
SEGDEVESLS TEPESDEGTT TNLENIQRKK NLNGDAESSS LDHACYVANV TPSSLQDDRL  300
TLPKSFVKAN GLETRCGEIV LINEKGISWK LNLKPKRSCG TMYITRGWRS FCRVNGLRAG  360
SFFTFKLIQR RGTLVLRLSS QFENKFVTLT LNPSNLTSYP LFLPLHFTKR HGINEKTKMT  420
LLDKNGVKWF TNLRSEKTSD RVRLVGGWQD FFEANCVEIG ESIVLKLIWE GDKSCVLKFW  480
SNVSLSSGLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140574.10.0PREDICTED: putative B3 domain-containing protein REM15 isoform X3
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLM4ETE40.0M4ETE4_BRARP; Uncharacterized protein
STRINGBra032075.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-175B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]