PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 24578.2 Da PI: 7.8027 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.8e-18 | 4 | 89 | 5 | 93 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + +d+l +gr +l+ +f++++g+ k++ ++tl ++g++W+v+l+ + ++++ l++GWkeF+kangLk+g+ ++++ + +++ ++ XP_009140573.1 4 KLANDSLIRGRQYLSVPFMRANGMTKPG--MITLVGKDGEKWKVNLKEEASGSALCLGTGWKEFAKANGLKTGEYFTLESAW-KNEIPM 89 5678899999************998666..8***************88888888************************9666.444455 PP | |||||||
2 | B3 | 38.7 | 1.7e-12 | 136 | 222 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 k + l lp +f++++g+k+ + t+t+ ++g +W l g++ + GW++F++ang+k g+++ + l+++ +++ + +k++ + XP_009140573.1 136 DVKACTLNLPSEFVTAIGIKEFG--TITFLGKNGMKWWGCL--LSENGSVAVGIGWRNFCEANGVKLGESFSLVLINEeEDTGPIFKFCPN 222 456689***********988544..9********9999888..666677999************************888999999999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 5.5E-23 | 1 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.662 | 1 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-16 | 2 | 90 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.64E-18 | 5 | 92 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-16 | 9 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-17 | 12 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.9E-12 | 127 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 127 | 225 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-14 | 128 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-14 | 133 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.3E-11 | 136 | 222 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.05E-8 | 140 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKLKLANDSL IRGRQYLSVP FMRANGMTKP GMITLVGKDG EKWKVNLKEE ASGSALCLGT 60 GWKEFAKANG LKTGEYFTLE SAWKNEIPML SLVNTESASD RKERGESSKA MEKESTDTSS 120 VVQNRVVVTL ALETKDVKAC TLNLPSEFVT AIGIKEFGTI TFLGKNGMKW WGCLLSENGS 180 VAVGIGWRNF CEANGVKLGE SFSLVLINEE EDTGPIFKFC PNSGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140573.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140573.1 | 1e-162 | PREDICTED: B3 domain-containing protein REM12-like | ||||
Swissprot | P0CAP4 | 3e-76 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A078IW32 | 1e-159 | A0A078IW32_BRANA; BnaA04g28160D protein | ||||
STRING | Bo4g154910.1 | 1e-146 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14267 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-78 | B3 family protein |