PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140529.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 348aa MW: 36811.9 Da PI: 6.8026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	151	196	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq XP_009140529.1 151 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 196 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-17	144	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-13	144	200	No hit	No description
PROSITE profile	PS50888	17.409	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	148	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-9	151	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-14	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MMDSLLTPST SSHMQTPATT FDHEDFLNHI FASAPWPSVD ETQGPQPPPS DGFVDSRNQQ 60 IMMMPLSSHQ QNDNVDGSSA HALYNGFAAT RSLPFHIPQG SGGGPMHQQG QTQRQPQQQA 120 SASTDTGGTA VSPSHSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD 180 KASMLDEIID YVKFLQLQVK VLSMSRLGGA AYVSSQISEA GGSHESASSA VAGGNQPTGN 240 SNDGLTMTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATSHT RNSLIPGAAD 300 VGGSPSSSNL SGKTVQTMNT LKLNSNGNGM PEGSSSIAVK EAVTISKP

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MMDSLLTPST SSHMQTPATT FDHEDFLNHI FASAPWPSVD ETQGPQPPPS DGFVDSRNQQ  60
IMMMPLSSHQ QNDNVDGSSA HALYNGFAAT RSLPFHIPQG SGGGPMHQQG QTQRQPQQQA  120
SASTDTGGTA VSPSHSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD  180
KASMLDEIID YVKFLQLQVK VLSMSRLGGA AYVSSQISEA GGSHESASSA VAGGNQPTGN  240
SNDGLTMTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATSHT RNSLIPGAAD  300
VGGSPSSSNL SGKTVQTMNT LKLNSNGNGM PEGSSSIAVK EAVTISKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140529.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140529.1	0.0	PREDICTED: transcription factor bHLH66
Refseq	XP_013746997.1	0.0	transcription factor bHLH66-like isoform X1
Swissprot	Q9ZUG9	1e-168	BH066_ARATH; Transcription factor bHLH66
TrEMBL	M4ETI0	0.0	M4ETI0_BRARP; Uncharacterized protein
STRING	Bra032111.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-145	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]