PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140153.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 307aa    MW: 34648 Da    PI: 5.4475
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573127.55.8e-40100195397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                     fqr+w+ eDei++LqG+idfk++tg+sp+dd +a+y+ vkks+sf+v+k+q++eKir LKkKf+++  + +k+gk+psfsk+hd+k+f+l+k +W
  XP_009140153.1 100 FQRVWTGEDEIAVLQGIIDFKTETGSSPYDDKNALYDLVKKSVSFDVTKTQFMEKIRALKKKFENNLGRgKKKGKDPSFSKAHDRKAFDLAKLVW 194
                     9*******************************************************************98899********************** PP

          DUF573  97 g 97 
                     g
  XP_009140153.1 195 G 195
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-33100195IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSGKLLKKLE DPPVASSSSE EEEDEDAVAN SSSEEEEEET DSETEAEPVA KPLVKPPADS  60
IKVETSSKPE TKKKRSSETN EVEAKRVKRV SGEETKKSCF QRVWTGEDEI AVLQGIIDFK  120
TETGSSPYDD KNALYDLVKK SVSFDVTKTQ FMEKIRALKK KFENNLGRGK KKGKDPSFSK  180
AHDRKAFDLA KLVWGDNGIM ALEPLSAVKS KKVEHAVKKQ EEPAVMKQEE PAVMNQEFVP  240
IVDLVARFGV DDLAAKQGWS RLSSKDRERF EEQWKELQLK EFKFYSQKSG FIHEVVTKMA  300
EASRPDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140153.10.0PREDICTED: probable transcription factor At1g11510
SwissprotC0SUU61e-67STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLA0A397ZKQ60.0A0A397ZKQ6_BRACM; Uncharacterized protein
TrEMBLM4E9I90.0M4E9I9_BRARP; Uncharacterized protein
STRINGBra025445.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-62DNA-binding storekeeper protein-related transcriptional regulator