PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139700.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 299aa    MW: 33917.1 Da    PI: 6.1018
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573864.9e-2786176297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      f r++se+DeivlLqG+id + +   +p +    fy+ +k+s sf+v+  q+ +Kir+LK+K+k k+k    ++  s s++h+qk+f+lsk iW
  XP_009139700.1  86 SFARVFSEKDEIVLLQGVIDSQVE---NPLKYKRSFYQSMKGSFSFDVTLVQFKDKIRNLKRKYKAKEKS--GEQAASASNPHQQKCFQLSKAIW 175
                     689*****************9555...5777889*********************************999..889999***************** PP

          DUF573  97 g 97 
                     g
  XP_009139700.1 176 G 176
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.5E-2587176IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MANNLKHPFE DPPSSSAGEE EIETEEEDQQ HLHTIFSSEE DEPEDPPPRS VSKKRLSTNV  60
SNSTNVAKKI YRQGGKMGTT NNNTPSFARV FSEKDEIVLL QGVIDSQVEN PLKYKRSFYQ  120
SMKGSFSFDV TLVQFKDKIR NLKRKYKAKE KSGEQAASAS NPHQQKCFQL SKAIWGADGI  180
AFESKESERG LTKKRDLVTP GMGNNNAQED MEKAPLVEKE STGWDDESSF FLGMDFLKEK  240
WTKLPAESKK GTQEKMKKLH ANELECQKYE EMLKVMKDKC ARDKVELLNE VTSLIMAAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139700.10.0PREDICTED: probable transcription factor At1g66420
TrEMBLM4EH430.0M4EH43_BRARP; Uncharacterized protein
STRINGBra028108.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-37DNA-binding storekeeper protein-related transcriptional regulator