PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 246aa MW: 27398.5 Da PI: 9.2249 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.3 | 2.2e-15 | 73 | 129 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++kr+rr+ +NRe+ArrsR+RK++++ e + + +L +e ++L ++l+ ++ ++++ XP_009139366.1 73 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQAGQLRGEHSTLLSRLSDMNHKCDAA 129 68*********************************************9999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-15 | 71 | 135 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.3E-10 | 72 | 127 | No hit | No description |
PROSITE profile | PS50217 | 10.289 | 73 | 125 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-12 | 74 | 127 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.79E-10 | 75 | 124 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 78 | 93 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.4E-13 | 142 | 222 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
NVLRVVNNRV VLTILGSVVA QTSPDASSVR SVPSTSIQKK LDVPATQATS ISSRDDSDDD 60 DLDGDADNGD PTDVKRARRM LSNRESARRS RRRKQEQMNE FDTQAGQLRG EHSTLLSRLS 120 DMNHKCDAAA VDNRILRADI ETLRTKVKMV EETVKRVTGV NPLHWARPNM GTPLNNTPSD 180 SSRILPNSNH VLEPAIPSTT NAGLASNQRV ERANLLPEQV NREGMQNQFA TNPNLYETLL 240 HWNHKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 94 | RRSRRRKQ |
2 | 89 | 94 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.5520 | 2e-64 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057509 | 0.0 | AY057509.1 Arabidopsis thaliana bZIP transcription factor-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139366.1 | 1e-180 | PREDICTED: basic leucine zipper 25-like, partial | ||||
Swissprot | Q9M1G6 | 1e-109 | BZP25_ARATH; Basic leucine zipper 25 | ||||
TrEMBL | M4DE83 | 1e-163 | M4DE83_BRARP; Uncharacterized protein | ||||
STRING | Bra014802.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 1e-108 | basic leucine zipper 25 |
Publications ? help Back to Top | |||
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