PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139340.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 593aa    MW: 69519.1 Da    PI: 6.272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63e-33371652128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                     ppG+rF Ptd e++ +yLk+   ++k +  +  i++++iy+++P++L +++k+ + +ew+f s+r k +++g++++r   + gyW+++  +k+++
  XP_009139340.1  37 PPGYRFVPTDAEIIYYYLKPFSPDNKKSWPNLpIHHANIYESNPQQLTAEYKKgNLTEWFFISERTKIKTNGQKQKRvDHNGGYWHSKAVTKKIK 131
                     9********************999998887777**************9655551556********************76789************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + k+ +vg k+tL ++ g++p+ge+t+W+m+ey l
  XP_009139340.1 132 V-KKDVVGYKTTLNYFVGKQPNGERTNWLMQEYWL 165
                     *.8999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-4028184IPR003441NAC domain
PROSITE profilePS5100538.37536184IPR003441NAC domain
PfamPF023651.0E-1737164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MTPQRSKRSE TPQPSPQHEP NMQSSSSSSA SSSLAYPPGY RFVPTDAEII YYYLKPFSPD  60
NKKSWPNLPI HHANIYESNP QQLTAEYKKG NLTEWFFISE RTKIKTNGQK QKRVDHNGGY  120
WHSKAVTKKI KVKKDVVGYK TTLNYFVGKQ PNGERTNWLM QEYWLESSGH NNTVDYALCK  180
IYLSPTAQKN MKEEDVEEVE EEAMQPRTVE IQQPQPPQFY PTPLVSHQPQ PLPQFWPTEL  240
DSYQPQRQDN EYQEPLQAQP LNTIYQHQSQ CPNNESEYQE PHQPQPLNTI YQHQSQRHNT  300
ESQYQEPHQP QPLNTIYQHQ SQRHNTESQY QEPHQPQPLN TIYQHQSQRH NTESQYQEPH  360
QPQPLDTIDH HQPQCHDSAY QNPPQPQPLD TIHYHQSQLH DIEYQEPHQS QPFDNIIHHQ  420
SHQVQFWQET SGSHQRQLQD QLPQSWAAPL DSYPPHCHDI QYPQPQPLDA IEYQYLYQSG  480
PLTTYKNVIE SCTQDKSNGD IKKVDHALKI HLTPRGIKRE VQEEEDEKRK RKRKKNEGGD  540
EAPKEELEQL INSHQNSSDN DSFFTGFVDT HLLHIDIESS ISNCCLKKSP DEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-183418215163NO APICAL MERISTEM PROTEIN
1ut4_B1e-183418215163NO APICAL MERISTEM PROTEIN
1ut7_A1e-183418215163NO APICAL MERISTEM PROTEIN
1ut7_B1e-183418215163NO APICAL MERISTEM PROTEIN
4dul_A1e-183418215163NAC domain-containing protein 19
4dul_B1e-183418215163NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528533RKRKRK
2528534RKRKRKK
3528535RKRKRKKN
4530534RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A397ZI180.0A0A397ZI18_BRACM; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-52NAC domain containing protein 64