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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009138860.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
BBR-BPC |
| Protein Properties |
Length: 301aa MW: 33712 Da PI: 9.919 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009138860.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 346.1 | 8e-106 | 1 | 301 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91
mdd g+r+ r+k+ + +++ +s+k q+ms+iaerd++i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l+al++++ns+
XP_009138860.1 1 MDDGGHRDngRHKApQGQHQqPSMK-----QVMSIIAERDTAIQERNLAVSERKSAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRDNSM 90
9*****9888988843332236666.....*************************************************************9985 PP
GAGA_bind 92 asalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
a++ ++ ++ +++ ql+e + e ++++ ++ + + +++ +++k++k+ ++++ pk++++ vkke++d+
XP_009138860.1 91 ATSR------QHQPHMPHHMLQLTEnNAYETREIGTSPPPTTGSALASAKPKRGRKVKEPKAAANKRGPKNQRK-------------VKKENEDD 166
5433......2223333333332221222222333333333333333444444444444444444444443333.............33333331 PP
GAGA_bind 186 r................skaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
sk+++ks ++ ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS+
XP_009138860.1 167 LskimsldyseeeeatgSKSDWKSEEMmvRLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSG 261
12344455555556677*********96669**************************************************************** PP
GAGA_bind 263 gafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
+af+klL++LaaeG +dls pvDLkd WAkHGtn+++ti+
XP_009138860.1 262 SAFNKLLSRLAAEGhHDLSSPVDLKDRWAKHGTNRYITIK 301
**************88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQHQ QPSMKQVMSI IAERDTAIQE RNLAVSERKS AVAERDMAFL 60
QRDTAIAERN NAIMERDSAL TALQYRDNSM ATSRQHQPHM PHHMLQLTEN NAYETREIGT 120
SPPPTTGSAL ASAKPKRGRK VKEPKAAANK RGPKNQRKVK KENEDDLSKI MSLDYSEEEE 180
ATGSKSDWKS EEMMVRLNQV VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM 240
HPLPALPNKK HARVGGRKMS GSAFNKLLSR LAAEGHHDLS SPVDLKDRWA KHGTNRYITI 300
K
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189297 | 1e-109 | AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence. |
| GenBank | EF529513 | 1e-109 | EF529513.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | EF529514 | 1e-109 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
