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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009138855.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
BBR-BPC |
| Protein Properties |
Length: 306aa MW: 34416.9 Da PI: 9.919 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009138855.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 343.9 | 3.8e-105 | 1 | 306 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyyepa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91
mdd g+r+ r+k+ ++ + ++ +q+ms+iaerd++i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l+al++++ns+
XP_009138855.1 1 MDDGGHRDngRHKAPQGQQwmMQHQQPSMKQVMSIIAERDTAIQERNLAVSERKSAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRDNSM 95
999999988999884444423333333457*************************************************************9985 PP
GAGA_bind 92 asalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
a++ ++ ++ +++ ql+e + e ++++ ++ + + +++ +++k++k+ ++++ pk++++ vkke++d+
XP_009138855.1 96 ATSR------QHQPHMPHHMLQLTEnNAYETREIGTSPPPTTGSALASAKPKRGRKVKEPKAAANKRGPKNQRK-------------VKKENEDD 171
5433......2223333333332221222222333333333333333444444444444444444444443333.............33333331 PP
GAGA_bind 186 r................skaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
sk+++ks ++ ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS+
XP_009138855.1 172 LskimsldyseeeeatgSKSDWKSEEMmvRLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSG 266
12344455555556677*********96669**************************************************************** PP
GAGA_bind 263 gafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
+af+klL++LaaeG +dls pvDLkd WAkHGtn+++ti+
XP_009138855.1 267 SAFNKLLSRLAAEGhHDLSSPVDLKDRWAKHGTNRYITIK 306
**************88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQQW MMQHQQPSMK QVMSIIAERD TAIQERNLAV SERKSAVAER 60
DMAFLQRDTA IAERNNAIME RDSALTALQY RDNSMATSRQ HQPHMPHHML QLTENNAYET 120
REIGTSPPPT TGSALASAKP KRGRKVKEPK AAANKRGPKN QRKVKKENED DLSKIMSLDY 180
SEEEEATGSK SDWKSEEMMV RLNQVVYDET TMPPPVCSCT GVLRQCYKWG NGGWQSSCCT 240
TTLSMHPLPA LPNKKHARVG GRKMSGSAFN KLLSRLAAEG HHDLSSPVDL KDRWAKHGTN 300
RYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189297 | 1e-109 | AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence. |
| GenBank | EF529513 | 1e-109 | EF529513.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | EF529514 | 1e-109 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
