PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138781.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 290aa    MW: 32343.7 Da    PI: 7.7191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.8e-161467148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++kq   g+W+t +++        + R++k+c++rw +yl
   XP_009138781.1 14 KGPWTPEEDEILVEYIKQNSHGSWRTLPKKADfssllgLLRCGKSCRLRWTNYL 67
                     79************************************9*************97 PP
2Myb_DNA-binding537.8e-1773118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_009138781.1  73 RGSFTPEEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 118
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-22570IPR009057Homeodomain-like
PROSITE profilePS5129413.003967IPR017930Myb domain
SuperFamilySSF466893.95E-2811114IPR009057Homeodomain-like
SMARTSM007171.2E-101369IPR001005SANT/Myb domain
PfamPF002497.4E-131467IPR001005SANT/Myb domain
CDDcd001673.54E-81667No hitNo description
PROSITE profilePS5129424.29368122IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2571122IPR009057Homeodomain-like
SMARTSM007173.7E-1572120IPR001005SANT/Myb domain
PfamPF002491.0E-1573118IPR001005SANT/Myb domain
CDDcd001674.08E-1175118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRKPCCDKE GLKKGPWTPE EDEILVEYIK QNSHGSWRTL PKKADFSSLL GLLRCGKSCR  60
LRWTNYLIPD IKRGSFTPEE EKLVVQLHAI LGNRWAAIAA QLPGRTDNEI KNLWNTHLKK  120
HLLSMGLDPK THEALASYGL AKHAPASPTT RHMAQWESAR VEAEARLSKE SMLFSSCVEV  180
KYDCDHFLRI WNSKIGESFR NIASCDKSTT TSQSPCSRKT SSSSALVKSS TSSCVGKEIV  240
MGIHHGSDSS SLCWNNLEGV SSDSSFQLLL DFPISDDDMS FLEENIGSYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121225108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138781.10.0PREDICTED: myb-related protein Myb4-like isoform X1
SwissprotQ9M2D91e-161MYB17_ARATH; Transcription factor MYB17
TrEMBLM4DD780.0M4DD78_BRARP; Uncharacterized protein
STRINGBra014446.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-144myb domain protein 17