PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138291.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 298aa    MW: 33906.9 Da    PI: 6.0374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.8e-112425395
                    EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ++k+++++++kGW +Fv +n L++gDf++F ++g + fe   +
  XP_009138291.1  2 KRKRDEVYFGKGWTKFVTDNSLNDGDFLTFVYNGANVFEV--S 42
                    688899**************************99888844..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.914147IPR003340B3 DNA binding domain
PfamPF023623.4E-8240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-11246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-9444No hitNo description
SuperFamilySSF1019364.71E-11449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-7197282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-6200284IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKRKRDEVYF GKGWTKFVTD NSLNDGDFLT FVYNGANVFE VSIYGLGGCK EMRAVTEVEE  60
VKEDSVVSLS STDSDTSSES VVANTISKNK GKSQVVEDED ESEEAEAETC SESTVAKTTT  120
GSRNKGKKKE KVVESSNEDS DSDYTEANED SDSDDTEVSG DLYAFSESSN TVAQPKKKRE  180
RVTIKKIKDP EKYLVDPKNV FFETNVKNRP YELLVSAQLV KDYDLKFKKL VYYTDYHKDG  240
KLQAKTTKWK DNRVCIKKWN RICKRNKLKK GDGILCELKR KEGFVYAVII HIVREKDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138291.10.0PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ052e-76Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A078I5F20.0A0A078I5F2_BRANA; BnaA03g52800D protein
TrEMBLM4DMB80.0M4DMB8_BRARP; Uncharacterized protein
STRINGBra017651.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.18e-46B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]