PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009138180.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 377aa MW: 42672.6 Da PI: 8.6032

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009138180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.3	1e-16	34	114	13	98
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++rl +pkkf + ++ k k +tl+++sg +++v l + +++ ++ GW +Fvk++ L e D +vFk++g+sef v +f+ XP_009138180.1 34 HNRLAIPKKFSTYCKRK--LAKIVTLKSPSGTKYNVGL--EEDDEKtLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEF--EVLIFD 114 789*****9766655..7789***********..777766699*********************9998888..888876 PP
2	B3	59.4	6.3e-19	271	368	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+ v+++s+v +++ l++p + +++++ +++ +++ ++ r+W +k++y +++gr + GWk+Fv++n+L+egD++vF+ + + f+l XP_009138180.1 271 FLVVMKRSHVVSKCFLYVPVQWSARNMSREPQ--DVV-MQVGERKWHLKFKYYGSKGRGGVSVGWKKFVRDNNLCEGDVCVFEPAkPEaKPFHLD 362 78899*******************988655..566.55689*****99999988999******************553456888888 PP EEEE-S CS B3 94 vkvfrk 99 v +fr+ XP_009138180.1 363 VYIFRA 368 888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.67E-20	21	115	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.733	22	116	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-20	23	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.81E-17	24	114	No hit	No description
SMART	SM01019	9.5E-19	25	116	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-14	34	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-19	269	368	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.88E-19	271	368	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.451	271	369	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-16	271	368	IPR003340	B3 DNA binding domain
CDD	cd10017	3.38E-21	271	367	No hit	No description
SMART	SM01019	1.8E-19	271	369	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MEENCEDCMR WEEQLYWNHF QTVHFSQLLL PGFHNRLAIP KKFSTYCKRK LAKIVTLKSP 60 SGTKYNVGLE EDDEKTLAFR CGWDKFVKDH SLHESDLLVF KFNGSSEFEV LIFDGDTLCE 120 KPTSYFVRKC GHAAEKTSRV TDFTATSSRS PKRYISIADD VETTVKISPV GNELDDLIDI 180 DTMLPQTGTD QEEHSNSDID TDSGQLPVIS PTSKGPISEG KYPIGVFKKM RGQISINDPD 240 RKAGGSRKRI GEINKKKALS LAKRAVSTKG FLVVMKRSHV VSKCFLYVPV QWSARNMSRE 300 PQDVVMQVGE RKWHLKFKYY GSKGRGGVSV GWKKFVRDNN LCEGDVCVFE PAKPEAKPFH 360 LDVYIFRAAE AESSNNG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MEENCEDCMR WEEQLYWNHF QTVHFSQLLL PGFHNRLAIP KKFSTYCKRK LAKIVTLKSP  60
SGTKYNVGLE EDDEKTLAFR CGWDKFVKDH SLHESDLLVF KFNGSSEFEV LIFDGDTLCE  120
KPTSYFVRKC GHAAEKTSRV TDFTATSSRS PKRYISIADD VETTVKISPV GNELDDLIDI  180
DTMLPQTGTD QEEHSNSDID TDSGQLPVIS PTSKGPISEG KYPIGVFKKM RGQISINDPD  240
RKAGGSRKRI GEINKKKALS LAKRAVSTKG FLVVMKRSHV VSKCFLYVPV QWSARNMSRE  300
PQDVVMQVGE RKWHLKFKYY GSKGRGGVSV GWKKFVRDNN LCEGDVCVFE PAKPEAKPFH  360
LDVYIFRAAE AESSNNG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009138180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138180.1	0.0	PREDICTED: B3 domain-containing protein REM16 isoform X2
Swissprot	Q8RYD1	1e-165	REM16_ARATH; B3 domain-containing protein REM16
TrEMBL	A0A397KXD9	0.0	A0A397KXD9_BRACM; Uncharacterized protein
TrEMBL	M4F7F0	0.0	M4F7F0_BRARP; Uncharacterized protein
STRING	Bra037010.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-167	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]