PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138178.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 383aa    MW: 43357.4 Da    PI: 8.3107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31.1e-16341141398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++rl +pkkf + ++ k    k +tl+++sg +++v l  +  +++   ++ GW +Fvk++ L e D +vFk++g+sef   v +f+
  XP_009138178.1  34 HNRLAIPKKFSTYCKRK--LAKIVTLKSPSGTKYNVGL--EEDDEKtLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEF--EVLIFD 114
                     789*******9766655..7789***************..777766699***********************9998888..888876 PP
2B359.46.4e-19277374199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                     f+ v+++s+v +++ l++p +  +++++ +++  +++ ++   r+W +k++y +++gr   + GWk+Fv++n+L+egD++vF+    + + f+l 
  XP_009138178.1 277 FLVVMKRSHVVSKCFLYVPVQWSARNMSREPQ--DVV-MQVGERKWHLKFKYYGSKGRGGVSVGWKKFVRDNNLCEGDVCVFEPAkPEaKPFHLD 368
                     78899*********************988655..566.55689*********99999988999********************553456888888 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v +fr+
  XP_009138178.1 369 VYIFRA 374
                     888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-2021115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.73322116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-2023114IPR015300DNA-binding pseudobarrel domain
CDDcd100177.64E-1724114No hitNo description
SMARTSM010199.5E-1925116IPR003340B3 DNA binding domain
PfamPF023623.5E-1434114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-19275374IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-21277373No hitNo description
PROSITE profilePS5086313.451277375IPR003340B3 DNA binding domain
PfamPF023621.0E-16277374IPR003340B3 DNA binding domain
SMARTSM010191.8E-19277375IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-19277374IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEENCEDCMR WEEQLYWNHF QTVHFSQLLL PGFHNRLAIP KKFSTYCKRK LAKIVTLKSP  60
SGTKYNVGLE EDDEKTLAFR CGWDKFVKDH SLHESDLLVF KFNGSSEFEV LIFDGDTLCE  120
KPTSYFVRKC GHAAEKTSRV TDFTATSSRS PKRYISIADD VETTVKISPV GNELDDLIDI  180
DTMLPQTGTD QEEHSNSDID TDSGQLPVIS PTSKGPISEG KYPIGVFKKM RGQISINDPD  240
RKADVEMIPG GSRKRIGEIN KKKALSLAKR AVSTKGFLVV MKRSHVVSKC FLYVPVQWSA  300
RNMSREPQDV VMQVGERKWH LKFKYYGSKG RGGVSVGWKK FVRDNNLCEG DVCVFEPAKP  360
EAKPFHLDVY IFRAAEAESS NNG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138178.10.0PREDICTED: B3 domain-containing protein REM16 isoform X1
SwissprotQ8RYD11e-170REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A397KXD90.0A0A397KXD9_BRACM; Uncharacterized protein
TrEMBLM4F7F00.0M4F7F0_BRARP; Uncharacterized protein
STRINGBra037010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-172B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]