PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009138037.1

Common Name

WRKY1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 285aa MW: 31720.2 Da PI: 7.283

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009138037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	160	218	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh XP_009138037.1 160 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSILVATYEGTHNH 218 58*************************99************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.8E-29	153	219	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-25	157	219	IPR003657	WRKY domain
SMART	SM00774	4.7E-34	160	220	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	161	218	IPR003657	WRKY domain
PROSITE profile	PS50811	25.97	162	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDCSSFLDLN TNPFDHNFPA KLPKEEVKVS TSSDLERKQN ASELREELNR VNSENKKLTE 60 MLAAVWENYY ALHHHLEKLQ SRKSPEMDQI EQPTKRRKQD SYELLGFGNG LSGGKTENSS 120 SNEDHHQLLS CKRPVTDSFN KANVSTVYVP SDSSDTSLTV KDGYQWRKYG QKVTRDNPSP 180 RAYFRCSFAP SCPVKKKVQR SAEDPSILVA TYEGTHNHLG PNGSEGDVTS QVGSSTVTLD 240 LVHSGQGTMQ EVLVQQMASS LTKDSKFTAA LAAAISGRLM EQSRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	160	223	14	76	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.15395	0.0	leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269\|PubMed:12068113}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009138037.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and pathogens. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:12068113}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430025	0.0	KF430025.1 Brassica rapa WRKY transcription factor 1 (WRKY1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138037.1	0.0	PREDICTED: WRKY transcription factor 18-like isoform X1
Refseq	XP_018512507.1	0.0	PREDICTED: WRKY transcription factor 18-like isoform X1
Swissprot	Q9C5T4	1e-157	WRK18_ARATH; WRKY transcription factor 18
TrEMBL	A0A397L7Z9	0.0	A0A397L7Z9_BRACM; Uncharacterized protein
TrEMBL	C5H9Y8	0.0	C5H9Y8_BRANA; WRKY transcription factor 18
TrEMBL	Q08ET3	0.0	Q08ET3_BRARC; WRKY DNA-binding protein 1
TrEMBL	V5RF64	0.0	V5RF64_BRACM; WRKY transcription factor 1
STRING	Bra023983.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6584	19	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31800.1	1e-159	WRKY DNA-binding protein 18

Link Out ? help Back to Top
Entrez Gene	103862084

Publications ? help Back to Top
Keates SE,Kostman TA,Anderson JD,Bailey BA Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis. Plant Physiol., 2003. 132(3): p. 1610-22 [PMID:12857840] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R AthaMap: from in silico data to real transcription factor binding sites. In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52 [PMID:16922688] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Tang J, et al. Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis). BMC Plant Biol., 2013. 13: p. 188 [PMID:24267479] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang Y, et al. Regulation of oncogene expression in T-DNA-transformed host plant cells. PLoS Pathog., 2015. 11(1): p. e1004620 [PMID:25615824] Geilen K,Böhmer M Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana. Sci Rep, 2015. 5: p. 13369 [PMID:26293691] Geilen K,Böhmer M Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation. Plant Signal Behav, 2015. 10(11): p. e1106659 [PMID:26479147] Lu K, et al. Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance. J. Exp. Bot., 2016. 67(17): p. 5009-27 [PMID:27406784] Birkenbihl RP,Kracher B,Roccaro M,Somssich IE Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity. Plant Cell, 2017. 29(1): p. 20-38 [PMID:28011690]