PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138029.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 351aa    MW: 40003.5 Da    PI: 9.5801
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3642.3e-202097994
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    + +ks+ l +p kf++eh +g k+e+kt++l++  s ++W+vk+  ++++    lt+GWkeFv+++ L++gDfvvF+l++++ f  +v
  XP_009138029.1 20 SGSKSH-LNIPVKFFSEHiEG-KHEGKTVMLRSdASEKTWKVKM--EGQR----LTQGWKEFVEEHVLRVGDFVVFRLERDMLF--NV 97
                    445555.***********644.56789****997889*******..8877....************************998888..44 PP
2B345.91e-14137237199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f++ + +s+++++g   lp +f++ +g++k++  ++++ d++g +W ++l++ k+  +     ++ ++GW+ F+  ng+++g++++++l++  ++
  XP_009138029.1 137 FVTLTPTSSSFETGKQHLPASFTRGNGLIKPG--KIIMVDKKGDEWVMELKVGKTNVSimymyIMSRNGWRIFCGVNGVRAGESLTLELIR-GGE 228
                     5666778999*******************777..7***************88444444546655566**********************98.777 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     ++++k+++k
  XP_009138029.1 229 SPMLKFCSK 237
                     799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-247104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.91611103IPR003340B3 DNA binding domain
CDDcd100175.16E-181298No hitNo description
SMARTSM010194.3E-2514103IPR003340B3 DNA binding domain
PfamPF023627.9E-152195IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-15133241IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-20137238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-14137237IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-14137237IPR003340B3 DNA binding domain
CDDcd100177.14E-14137236No hitNo description
PROSITE profilePS5086311.928137237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVNASLLSPA PPHFFQPLLS GSKSHLNIPV KFFSEHIEGK HEGKTVMLRS DASEKTWKVK  60
MEGQRLTQGW KEFVEEHVLR VGDFVVFRLE RDMLFNVTAL GSSNCEIQYT PSGSRRQEEE  120
EESVETEKEI KKNLTRFVTL TPTSSSFETG KQHLPASFTR GNGLIKPGKI IMVDKKGDEW  180
VMELKVGKTN VSIMYMYIMS RNGWRIFCGV NGVRAGESLT LELIRGGESP MLKFCSKMEQ  240
TPFEAEARAH KRAKWCQEIR EKTAEEGEPS HRARASNKTN ANKKNLQNKQ SCSVSDQLTE  300
VKHSVVSTIT SIRRFREELK TKEQELEGSL QEINNLERKM QRNQTTSSSN N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138029.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLM4E5D60.0M4E5D6_BRARP; Uncharacterized protein
STRINGBra023990.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2333634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-90B3 family protein