PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137607.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 464aa    MW: 51762.7 Da    PI: 7.3015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30138195260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrK GqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  XP_009137607.1 138 DDGYNWRKNGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQMTDIIYKGTHEHPK 195
                     8****************************************.***************85 PP
2WRKY1079.7e-34288346159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009137607.1 288 LDDGYKWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 346
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.309132196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-25134196IPR003657WRKY domain
SuperFamilySSF1182901.96E-23135196IPR003657WRKY domain
SMARTSM007746.1E-31137195IPR003657WRKY domain
PfamPF031061.8E-23138194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37273348IPR003657WRKY domain
SuperFamilySSF1182901.57E-29280348IPR003657WRKY domain
PROSITE profilePS5081138.4283348IPR003657WRKY domain
SMARTSM007748.8E-39288347IPR003657WRKY domain
PfamPF031065.6E-26289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSSSLFTSSH CRSSLCLPEP SPTTGSLFKP RPVHVNSSSY TGRTLHQNTF TEHKSTEFEF  60
RPPASNMVYA EHRSEPPVQD HGSSHSPSSI SETAASSTDL SRPTPPPLQT PPTGSDQDES  120
VQTSQNDSRG STPSVLADDG YNWRKNGQKH VKGSEFPRSY YKCTHPNCEV KKLFERSHDG  180
QMTDIIYKGT HEHPKPQPGR RNSAAQEERI EKGVYNLSQA IEQTGNNNPE VPPTTEDGGE  240
VKDDLEEEED PFTKRRRLEG SMEITTPLVK PIREPRVVVQ TLSEVDILDD GYKWRKYGQK  300
VVRGNPNPRS YYKCTAPGCP VRKHVERASH DPKAVITTYE GKHNHDVPTS KSTNHHVIQP  360
RFRPDETTDT ISLNLGVGIS SDGPDHTSNE RNQQLLINQT HPNGVGFRFV HAAPMSYYHG  420
SLNSGIHQYG SRETQNETRN GGVSSLNHSS YQYPHNIGRI QSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37136349878Probable WRKY transcription factor 4
2lex_A1e-37136349878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931550.0KM593155.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137607.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A397L1330.0A0A397L133_BRACM; Uncharacterized protein
STRINGBra019095.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.10.0WRKY family protein